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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G357580
Reference: TK1151 Chr: Chr03 Coordinates: 88194909-88201047 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3476 bp · TkA03G357580|TK1151|cDNA

AAAAGAAGGACCCGAACCGTAAGAAAATTTGAACTTGACGATTGACCCATTGTCAAAGACTTCCTCAAAGAAACACAGAGATGAGATCTATCAGACGGCTGATAATTACTTCCAATACCACCCCAAATCGCAAGAACCCTTGAAAGCTCTACCCACGGGCGCCAAAAACCTCCCAAACATAATCACAAAAATACACATTACACACGCATACACATCTTCAAATCATTACTATAAAGATACACCAATAAAACCCTCTATCT...

CDS

Download CDS FASTA

2958 bp · TkA03G357580|TK1151|CDS

ATGGCCCTCGAGAACATTGTCAAAGAAGCATTGAACGCACTCTATCATCACCCAGATGACGCTGTTCGCTCTCAAGCCGATCAATGGCTTCAAGAGTTCCAACGGACAATCGATGCGTGGCAGGTGTCCGATAATTTGCTTCACGATGCTAGTAGCAATGTGGAAACTCTAATTTTCTGCTCACAAACTCTCAGAAGTAAGGTGCAAAGAGATTTTGAAGAATTACCCTCTGAAGCATTCCGTTCACTTCGCGATTCTTT...

Protein

Download Protein FASTA

985 aa · TkA03G357580|TK1151|PROTEIN

MALENIVKEALNALYHHPDDAVRSQADQWLQEFQRTIDAWQVSDNLLHDASSNVETLIFCSQTLRSKVQRDFEELPSEAFRSLRDSLNNLLKTFHKGPPKISLAVAALAVQVPAEDWGDGGIMNWLRDEMNSHPDIVPSFLELLRVLPEEVFNYKIAARPDRRRKFENELASTMDVSLGILTACLNIPELKEQALEAFASWLRLRHRIPASVLATHPLVLTALSSLTSDVLSEAAVNVISELIHYTSARNTDGFSVQMPL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G357580
TK1151 IDTkA03G357580
OH-1004 IDLXL04_008578
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G357580
LocationChr03:88194909-88201047 (+)
DescriptionSimilar to MOS14: Transportin MOS14
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g62600 Functions as a nuclear import receptor for serine-arginine rich (SR) proteins. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008578 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006403 RNA localization Biological Process
GO:0006404 RNA import into nucleus Biological Process
GO:0006606 protein import into nucleus Biological Process
GO:0035719 tRNA import into nucleus Biological Process
GO:0043484 regulation of RNA splicing Biological Process
GO:0051031 tRNA transport Biological Process
GO:0061015 snRNA import into nucleus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005642 annulate lamellae Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
KEGG gene cross-reference
ath:AT5G62600
hsa:23534
mmu:320938
sce:YOR160W
spo:2539916
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.650
Rank 1 · TkA03G357580 · TK1151
Cytoplasm0.501
Rank 2 · TkA03G357580 · TK1151
Lysosome / Vacuole0.051
Rank 3 · TkA03G357580 · TK1151
Cell membrane0.050
Rank 4 · TkA03G357580 · TK1151
Golgi apparatus0.044
Rank 5 · TkA03G357580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF11919PSME4_C9-48 aa
PF03810IBN_N26-91 aa
PF24139TPR_TNPO3_IPO13_4th38-69 aa
PF12205GIT1_C56-96 aa
PF08389Xpo1100-239 aa
PF24140TPR_TNPO3_IPO13_3rd172-197 aa
PF24140TPR_TNPO3_IPO13_3rd222-245 aa
PF08998Epsilon_antitox226-288 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G357580PF11919PSME4_C9480.2112.2
TkA03G357580PF03810IBN_N26911e-0629.4
TkA03G357580PF24139TPR_TNPO3_IPO13_4th38693.3e-1763.2
TkA03G357580PF12205GIT1_C56960.1712.9
TkA03G357580PF08389Xpo11002396.9e-1969.1
TkA03G357580PF24140TPR_TNPO3_IPO13_3rd1721971.3e-0629.3
TkA03G357580PF24140TPR_TNPO3_IPO13_3rd2222451.3e-0629.3
TkA03G357580PF08998Epsilon_antitox2262880.08614.0
TkA03G357580PF12205GIT1_C2332870.1712.9
TkA03G357580PF24138TPR_TNPO3_IPO13_2nd2813478.1e-1762.1
TkA03G357580PF03102NeuB2893930.08513.0
TkA03G357580PF18773Importin_rep3854210.2911.6
TkA03G357580PF11919PSME4_C4524860.2112.2
TkA03G357580PF12205GIT1_C4604930.1712.9
TkA03G357580PF24140TPR_TNPO3_IPO13_3rd4705591.3e-0629.3
TkA03G357580PF08389Xpo14725346.9e-1969.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8GUL2Arabidopsis thalianasp|Q8GUL2|MOS14_ARATH Transportin MOS1467.200%Swiss-ProtHigh

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