TkA03G356070 | RubberDandelionOmics

Gene overview

TkA03G356070

Reference: TK1151 Chr: Chr03 Coordinates: 87817903-87820333 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2150 bp · TkA03G356070|TK1151|cDNA

CAATTACGCAGAATTTTTTTGAAACCTCATTTAGTACTCTACAAACCCATCTTCTCCATCTTTCTCTCTCTAAACAACCCTAGAGAGAGAAGGAGGTGGATCATGATCTAGGAAACTTCGTCAACACAGGTCATGATCTATTCCTTTCTAGTCATTTCATCTCTTTCTCTGTCAACCACCAACCGATATAACCGTCCCCAAACAACCTCTCTCTTGTTTCCTAAATCCTCAAAAAAAAATGGCAACATTATCGAGAAGAT...

CDS

Download CDS FASTA

1332 bp · TkA03G356070|TK1151|CDS

ATGCAAAAGCGAAAAGAGAAAGATGGGTTTATTGAAGAAGATAAGAAGGTTTTTAATAGGTGTTCGTGTTGTGGTGAGCTTTTGAAATTGAGAGCTGCTTCTAAAGATTACACTCGAAGCCTTTCGAATCTTCGTGCTTCTGCTATTATTGCCACGTCTCCTCCTAGAACGCCATGGAAAACCGAGGATTCACGGTATACAGAGCTCAGATTTGTATCAGATTCCGAGCCAGATATGCCAGATTACGACTTTGGTTTAAG...

Protein

Download Protein FASTA

443 aa · TkA03G356070|TK1151|PROTEIN

MQKRKEKDGFIEEDKKVFNRCSCCGELLKLRAASKDYTRSLSNLRASAIIATSPPRTPWKTEDSRYTELRFVSDSEPDMPDYDFGLSTYAKYDELMSEDCCRSSHLLKSNKFFGIPLTDSGVVSPIRGNRTPIKASMEKSDLLSAETIDEASLADGDLSLQQIKKQVRIDHKTLMKLSMELDEERSAAAVAANNAMAMITRLQAEKASVQMEALQYQRMMEEHVEYDKEAIKILNDLLAKRDERITVMESELESYREKYG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G356070`
TK1151 ID	TkA03G356070
OH-1004 ID	LXL04_008590
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	97.600
Protein coverage (%)	TK1151 99.774 / OH-1004 77.320 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G356070

Location Chr03:87817903-87820333 (+)

Description Similar to MYOB6: Probable myosin-binding protein 6

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g18990`	Probable membrane-anchored myosin receptors.	No verified direct reference in this release
`At1g74830`	Probable membrane-anchored myosin receptors.	No verified direct reference in this release
`At2g30690`	Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment.	No verified direct reference in this release
`At5g16720`	Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment.	No verified direct reference in this release
`At1g70750`	Membrane-anchored myosin receptors that define a distinct, plant-specific transport vesicle compartment.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008590 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005811 lipid droplet Cellular Component

GO:0012505 endomembrane system Cellular Component

GO:0016020 membrane Cellular Component

GO:0030133 transport vesicle Cellular Component

GO:0017022 myosin binding Molecular Function

GO:0080115 myosin XI tail binding Molecular Function

KEGG gene cross-reference

ath:AT1G08800

ath:AT1G18990

ath:AT1G74830

ath:AT2G30690

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.509

Rank 1 · TkA03G356070 · TK1151

Nucleus0.383

Rank 2 · TkA03G356070 · TK1151

Cell membrane0.206

Rank 3 · TkA03G356070 · TK1151

Endoplasmic reticulum0.058

Rank 4 · TkA03G356070 · TK1151

Plastid0.057

Rank 5 · TkA03G356070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF23991DUF7310152-183 aa

PF04576Zein-binding162-252 aa

PF23991DUF7310201-267 aa

PF04102SlyX220-267 aa

PF04102SlyX349-363 aa

PF23991DUF7310365-401 aa

PF04102SlyX383-402 aa

PF04102SlyX417-417 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G356070	`PF23991`	DUF7310	152	183	4.5	8.6
TkA03G356070	`PF04576`	Zein-binding	162	252	5.3e-31	107.5
TkA03G356070	`PF23991`	DUF7310	201	267	4.5	8.6
TkA03G356070	`PF04102`	SlyX	220	267	3.9	8.9
TkA03G356070	`PF04102`	SlyX	349	363	3.9	8.9
TkA03G356070	`PF23991`	DUF7310	365	401	4.5	8.6
TkA03G356070	`PF04102`	SlyX	383	402	3.9	8.9
TkA03G356070	`PF04102`	SlyX	417	417	3.9	8.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LMC8`	Arabidopsis thaliana	sp\|Q9LMC8\|MYOB5_ARATH Probable myosin-binding protein 5	46.100%	Swiss-Prot	Medium
`F4HVS6`	Arabidopsis thaliana	sp\|F4HVS6\|MYOB6_ARATH Probable myosin-binding protein 6	33.900%	Swiss-Prot	Medium
`F4INW9`	Arabidopsis thaliana	sp\|F4INW9\|MYOB4_ARATH Probable myosin-binding protein 4	50.500%	Swiss-Prot	Low
`Q0WNW4`	Arabidopsis thaliana	sp\|Q0WNW4\|MYOB3_ARATH Myosin-binding protein 3	31.300%	Swiss-Prot	Medium
`Q9CAC4`	Arabidopsis thaliana	sp\|Q9CAC4\|MYOB2_ARATH Myosin-binding protein 2	30.600%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card