TkA03G353770 | RubberDandelionOmics

Gene overview

TkA03G353770

Reference: TK1151 Chr: Chr03 Coordinates: 87258337-87263744 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2175 bp · TkA03G353770|TK1151|cDNA

CCAGTGATATTTTCACTTGGTGAAAATGTATATAATAAGAGAGCCTCACAACCAACCAGCAGTAAACCTACTCTTTCCCTCCCACTTATCCTATCTCACCGTCCAAACCACCAACAATGGGGGCAGAGAAAGATGAGCAAAGAGCTCTCGAAACAATGGGGGCGGAGAAAGATGAGCAAAGCGTTCTCGAAGACGATGAGCCTCAAGTTAATTTCAGGGGAATCAAAGCTATGCCTTTCATCATAGGAAATGAGACATTT...

CDS

Download CDS FASTA

1797 bp · TkA03G353770|TK1151|CDS

ATGGGGGCAGAGAAAGATGAGCAAAGAGCTCTCGAAACAATGGGGGCGGAGAAAGATGAGCAAAGCGTTCTCGAAGACGATGAGCCTCAAGTTAATTTCAGGGGAATCAAAGCTATGCCTTTCATCATAGGAAATGAGACATTTGAGAAGTTAGGAGCAATTGGAACACTTTCTAATTTGTTGGTGTATATGACGACGGTTTTCAACATGAAGAGCATCACTGCAACCACTCTCCTGAACGTGTTCAATGGCACCACCAA...

Protein

Download Protein FASTA

598 aa · TkA03G353770|TK1151|PROTEIN

MGAEKDEQRALETMGAEKDEQSVLEDDEPQVNFRGIKAMPFIIGNETFEKLGAIGTLSNLLVYMTTVFNMKSITATTLLNVFNGTTNFSTLLGAFLCDTYFGRYKTLGFASIASFVGLFLIDLTAVFKGLHPPDCGSKEGSQCVSATPLQWLFLLGGFTSLIVGAAGIRPCNLAFGADQFNPNTESGKRGINSFFNWYFFTLTFAQVVSVTLVVYIQSDVSWSIGLGIPAIFMFISCILFFGGSRIYVKVKPEGSPLTSM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G353770`
TK1151 ID	TkA03G353770
OH-1004 ID	LXL04_008605
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G353770

Location Chr03:87258337-87263744 (+)

Description Similar to NPF2.11: Protein NRT1/ PTR FAMILY 2.11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g47960`	High-affinity, proton-dependent glucosinolate-specific transporter.	NRT/PTR transporters are essential for translocation of glucosinolate defence compounds to seeds.2012 · DOI: 10.1038/nature11285 Integration of biosynthesis and long-distance transport establish organ-specific glucosinolate profiles in vegetative Arabidopsis.2013 · DOI: 10.1105/tpc.113.110890
`At5g62680`	High-affinity, proton-dependent glucosinolate-specific transporter.	NRT/PTR transporters are essential for translocation of glucosinolate defence compounds to seeds.2012 · DOI: 10.1038/nature11285 Integration of biosynthesis and long-distance transport establish organ-specific glucosinolate profiles in vegetative Arabidopsis.2013 · DOI: 10.1105/tpc.113.110890
`At1g18880`	Low-affinity nitrate transporter facilitating nitrate loading into root phloem.	Arabidopsis nitrate transporter NRT1.9 is important in phloem nitrate transport.2011 · DOI: 10.1105/tpc.111.083618
`At1g69870`	Low-affinity proton-dependent nitrate transporter.	The Arabidopsis nitrate transporter NRT1.7, expressed in phloem, is responsible for source-to-sink remobilization of nitrate.2009 · DOI: 10.1105/tpc.109.067603
`At1g27080`	Low-affinity proton-dependent nitrate transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008605 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006857 oligopeptide transport Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010098 suspensor development Biological Process

GO:0010233 phloem transport Biological Process

GO:0015706 nitrate transmembrane transport Biological Process

GO:0042128 nitrate assimilation Biological Process

GO:0043562 cellular response to nitrogen levels Biological Process

GO:0048316 seed development Biological Process

GO:0055085 transmembrane transport Biological Process

GO:0090408 phloem nitrate loading Biological Process

GO:0090449 phloem glucosinolate loading Biological Process

GO:1901349 glucosinolate transport Biological Process

KEGG gene cross-reference

ath:AT1G18880

ath:AT1G27080

ath:AT1G69870

ath:AT3G47960

ath:AT5G62680

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.809

Rank 1 · TkA03G353770 · TK1151

Cytoplasm0.093

Rank 2 · TkA03G353770 · TK1151

Endoplasmic reticulum0.060

Rank 3 · TkA03G353770 · TK1151

Lysosome / Vacuole0.054

Rank 4 · TkA03G353770 · TK1151

Mitochondrion0.036

Rank 5 · TkA03G353770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19845DUF632089-89 aa

PF00854PTR2105-541 aa

PF19845DUF6320182-241 aa

PF19845DUF6320396-404 aa

PF00854PTR2565-588 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G353770	`PF19845`	DUF6320	89	89	0.033	14.8
TkA03G353770	`PF00854`	PTR2	105	541	5.5e-73	246.8
TkA03G353770	`PF19845`	DUF6320	182	241	0.033	14.8
TkA03G353770	`PF19845`	DUF6320	396	404	0.033	14.8
TkA03G353770	`PF00854`	PTR2	565	588	5.5e-73	246.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q944G5`	Arabidopsis thaliana	sp\|Q944G5\|PTR44_ARATH Protein NRT1/ PTR FAMILY 2.10	62.100%	Swiss-Prot	High
`Q9LV10`	Arabidopsis thaliana	sp\|Q9LV10\|PTR53_ARATH Protein NRT1/ PTR FAMILY 2.11	62.000%	Swiss-Prot	High
`Q9M9V7`	Arabidopsis thaliana	sp\|Q9M9V7\|PTR8_ARATH Protein NRT1/ PTR FAMILY 2.9	60.400%	Swiss-Prot	High
`Q8RX77`	Arabidopsis thaliana	sp\|Q8RX77\|PTR21_ARATH Protein NRT1/ PTR FAMILY 2.13	47.000%	Swiss-Prot	Medium
`Q9LFX9`	Arabidopsis thaliana	sp\|Q9LFX9\|PTR13_ARATH Protein NRT1/ PTR FAMILY 2.12	44.100%	Swiss-Prot	Medium

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