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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G336780
Reference: TK1151 Chr: Chr03 Coordinates: 82870365-82879379 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1033 bp · TkA03G336780|TK1151|cDNA

TCATTTTGGCTCTTCAAAATTCATTTTGTTCTAAATGCAAAGAGAACCTCGAAACATTTGATTTTATCCGGCGGGAAATTTCGAAACCTCACTAGGAAACCAGGCTTTCTTTCAGATCCATTGAGAGAGAGGAGCAATCGGAGATGGAGGGCAGTGAGAGTGAGGCGATTTTTGATTCCATGAACCTCAACCCGCAGCTTTTTATCAACGCCGCCCTAAACATCGTCGACGAATTGATCGACAGCGCGTTCGATCATCTT...

CDS

Download CDS FASTA

735 bp · TkA03G336780|TK1151|CDS

ATGGAGGGCAGTGAGAGTGAGGCGATTTTTGATTCCATGAACCTCAACCCGCAGCTTTTTATCAACGCCGCCCTAAACATCGTCGACGAATTGATCGACAGCGCGTTCGATCATCTTCACCAGGAGGCGTCAACTCAACTCAAGGTCAATGGTTCAGATAGGGCCGAAGATTTAACCAAGGGTTTGGATCATGTCCGAAACACAATCCAGTCTGCCTTAGACAAGCGGTTGACTATGTGGGAGAAGTACTGTTTTCTTCG...

Protein

Download Protein FASTA

244 aa · TkA03G336780|TK1151|PROTEIN

MEGSESEAIFDSMNLNPQLFINAALNIVDELIDSAFDHLHQEASTQLKVNGSDRAEDLTKGLDHVRNTIQSALDKRLTMWEKYCFLRLFVVPEGFSLPKDDEASGGDIMEVDDVDNPALDEQLDSLRTKLTLAAQESAQLKREIQALERQSAINNHQATAISELTMLSEQISENDAFQELQKLATELRMKVDKLKTEREDETQRSRFEKLQSWNEDLLKLIGGNGISSARPEETEAFVAGLNSH

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G336780
TK1151 IDTkA03G336780
OH-1004 IDLXL04_020503
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)92.100
Protein coverage (%)TK1151 57.377 / OH-1004 91.503
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G336780
LocationChr03:82870365-82879379 (-)
DescriptionSimilar to MIS12: Protein MIS12 homolog
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g35520 Constitutive component of kinetochores that is essential for proper cell division during mitotic cell cycle (Probable).
Characterization of a Mis12 homologue in Arabidopsis thaliana.2005 · DOI: 10.1007/s10577-005-1016-3
Meiosis-specific loading of the centromere-specific histone CENH3 in Arabidopsis thaliana.2011 · DOI: 10.1371/journal.pgen.1002121

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020503 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0051301 cell division Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0051382 kinetochore assembly Biological Process
GO:0000444 MIS12/MIND type complex Cellular Component
GO:0000775 chromosome, centromeric region Cellular Component
GO:0005634 nucleus Cellular Component
KEGG gene cross-reference
ath:AT5G35520
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.919
Rank 1 · TkA03G336780 · TK1151
Cytoplasm0.245
Rank 2 · TkA03G336780 · TK1151
Mitochondrion0.020
Rank 3 · TkA03G336780 · TK1151
Cell membrane0.013
Rank 4 · TkA03G336780 · TK1151
Golgi apparatus0.009
Rank 5 · TkA03G336780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05859Mis128-219 aa
PF25812RAD24_helical17-46 aa
PF30790DUF874122-72 aa
PF03861ANTAR33-44 aa
PF03961FapA33-71 aa
PF25994HH_AprE42-72 aa
PF04632FUSC43-80 aa
PF03234CDC37_N48-48 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G336780PF05859Mis1282191.8e-28100.6
TkA03G336780PF25812RAD24_helical17460.4211.5
TkA03G336780PF30790DUF874122721.19.8
TkA03G336780PF03861ANTAR33440.009216.5
TkA03G336780PF03961FapA33710.7510.1
TkA03G336780PF25994HH_AprE42721.010.1
TkA03G336780PF04632FUSC43802.67.2
TkA03G336780PF03234CDC37_N48480.6811.6
TkA03G336780PF07303Occludin_ELL52701.110.7
TkA03G336780PF03961FapA1101990.7510.1
TkA03G336780PF25994HH_AprE1182001.010.1
TkA03G336780PF27558MTUS1_CCDC69_CC21191649.37.3
TkA03G336780PF04632FUSC1202062.67.2
TkA03G336780PF07303Occludin_ELL1241961.110.7
TkA03G336780PF03234CDC37_N1252040.6811.6
TkA03G336780PF25051WHD_MCM81371720.2812.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q2V0Z5Arabidopsis thalianasp|Q2V0Z5|MIS12_ARATH Protein MIS12 homolog38.700%Swiss-ProtMedium

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