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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G334400
Reference: TK1151 Chr: Chr03 Coordinates: 82236691-82239969 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2341 bp · TkA03G334400|TK1151|cDNA

GTTAATTCCCGTTTTTAGTATCTCGGACAATTAGCAATTGAGAAAAGTCGGGATATACACGAAGGTTAATCAGGTATTCAGGTGAGACATAACATATCAGCGAGGAAAACTTTACAGTACAATTGTTCCATTCAATGGCGGAAGATTCAGAGAAGAGATTTCACGCCGTCATGGATAAGCTGTTCTTTGCTCCTCCTCCCAGCTCCAAACCCACGAGAACTCCCCGTTCGTCTAGTGCAACTGCAGGTGGATTTTTCAGA...

CDS

Download CDS FASTA

1500 bp · TkA03G334400|TK1151|CDS

ATGGCGGAAGATTCAGAGAAGAGATTTCACGCCGTCATGGATAAGCTGTTCTTTGCTCCTCCTCCCAGCTCCAAACCCACGAGAACTCCCCGTTCGTCTAGTGCAACTGCAGGTGGATTTTTCAGAGGCAAGAAACGCTCACATATGATGACTACGCCTCTAGCTGTGGTTGATTCGAAATCCATTGGAGCTACAATCGAAGAACTACGAAAAACATCTAGTGGAACAGTAGAATCACCCATGTGCAGACCATGGGACAG...

Protein

Download Protein FASTA

499 aa · TkA03G334400|TK1151|PROTEIN

MAEDSEKRFHAVMDKLFFAPPPSSKPTRTPRSSSATAGGFFRGKKRSHMMTTPLAVVDSKSIGATIEELRKTSSGTVESPMCRPWDREDLLQRLATFKSMTWFAKPEVVSAINCARRGWINVDMDIIACESCGGRLFFSTPSSWAQQQVENAASVFSIKLNNGHKLLCPWVDNACDEKLAQFPPTSQLNLVDDYKTRCASLLQLLELPVISSSAINHMQDPLLEHFLKNPPTLDMYYQAQKLISLCGWEPKLLPYIVDCK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G334400
TK1151 IDTkA03G334400
OH-1004 IDLXL04_008772
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)96.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G334400
LocationChr03:82236691-82239969 (-)
DescriptionSimilar to zc3hc1: NIPA-like protein
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008772 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0016567 protein ubiquitination Biological Process
GO:0051301 cell division Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0031965 nuclear membrane Cellular Component
GO:0044615 nuclear pore nuclear basket Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0019901 protein kinase binding Molecular Function
KEGG gene cross-reference
hsa:51530
mmu:232679
pon:100174537
xla:399009
xtr:496709
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.867
Rank 1 · TkA03G334400 · TK1151
Cytoplasm0.176
Rank 2 · TkA03G334400 · TK1151
Cell membrane0.040
Rank 3 · TkA03G334400 · TK1151
Endoplasmic reticulum0.021
Rank 4 · TkA03G334400 · TK1151
Plastid0.020
Rank 5 · TkA03G334400 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07967zf-C3HC84-209 aa
PF03604Zn_ribbon_RPAB4113-137 aa
PF08600NuBaID_C116-176 aa
PF23455DUF7129124-136 aa
PF26237DUF8054_C127-137 aa
PF00751DM161-176 aa
PF08600NuBaID_C243-249 aa
PF09416UPF1_Zn_bind263-301 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G334400PF07967zf-C3HC842098.3e-36123.7
TkA03G334400PF03604Zn_ribbon_RPAB41131370.1312.4
TkA03G334400PF08600NuBaID_C1161769.6e-1245.7
TkA03G334400PF23455DUF71291241360.1212.8
TkA03G334400PF26237DUF8054_C1271370.113.3
TkA03G334400PF00751DM1611760.02315.3
TkA03G334400PF08600NuBaID_C2432499.6e-1245.7
TkA03G334400PF09416UPF1_Zn_bind2633010.1213.0
TkA03G334400PF08600NuBaID_C2874379.6e-1245.7
TkA03G334400PF26237DUF8054_C2873020.113.3
TkA03G334400PF07967zf-C3HC2923038.3e-36123.7
TkA03G334400PF23455DUF71292923020.1212.8
TkA03G334400PF03604Zn_ribbon_RPAB42933020.1312.4
TkA03G334400PF09416UPF1_Zn_bind4054350.1213.0
TkA03G334400PF00751DM4184290.02315.3
TkA03G334400PF07967zf-C3HC4204308.3e-36123.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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