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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G315460
Reference: TK1151 Chr: Chr03 Coordinates: 77465225-77467506 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1137 bp · TkA03G315460|TK1151|cDNA

TTTCTGTCCATTTTTTTTTTTTTTTGCGGAAACACACACATTCACCTGGAGTGAGGGTGGTGTCGAAAGGGGAGTGCCTGAAAATAGTCAAACGCTGATCGACCATGGGAACCCTAGGAAGAGCAGCGTACACAGTCGGCTTTTGGATCCGGGAAACTGGTCAAGCCATGGATCGTCTTGGTTCACGTCTTCAGGGCAACAACTTCTTCAAAGAACAACTGTCCAGGCATCGAACTCTTATGAATGTTTACAATAAAGCC...

CDS

Download CDS FASTA

729 bp · TkA03G315460|TK1151|CDS

ATGGGAACCCTAGGAAGAGCAGCGTACACAGTCGGCTTTTGGATCCGGGAAACTGGTCAAGCCATGGATCGTCTTGGTTCACGTCTTCAGGGCAACAACTTCTTCAAAGAACAACTGTCCAGGCATCGAACTCTTATGAATGTTTACAATAAAGCCCCTGCGGTTGCAAATGATGCATTTGTGGCCCCAAGTGCTTCCATCATCGGTGATGTCCAAGTGGGCCCAGGATCCTCCATTTGGTACGGATGCGTTTTAAGAGG...

Protein

Download Protein FASTA

242 aa · TkA03G315460|TK1151|PROTEIN

MGTLGRAAYTVGFWIRETGQAMDRLGSRLQGNNFFKEQLSRHRTLMNVYNKAPAVANDAFVAPSASIIGDVQVGPGSSIWYGCVLRGDVNSISIGSGTNIQDHSLVHVAKSNLPGKVHPTIIGDNVTVGHSAVLHGCSIGNEAFIGMKATLLDGVVVEKNAMVAAGALVRQGTTIPAGEIWGGNPARFIRKLTDEEIAFFAKSADNYASLAQVHAGQNAGPIDKSELLKVLKRKVNEPATLF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G315460
TK1151 IDTkA03G315460
OH-1004 IDLXL04_008893
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G315460
LocationChr03:77465225-77467506 (+)
DescriptionSimilar to GAMMACA1: Gamma carbonic anhydrase 1, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g19580 Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. No verified direct reference in this release
At1g47260 May participate in carbonic acid breakdown but does not mediate reversible hydration of carbon dioxide.
Disruption of a nuclear gene encoding a mitochondrial gamma carbonic anhydrase reduces complex I and supercomplex I + III2 levels and alters mitochondrial physiology in Arabidopsis.2005 · DOI: 10.1016/j.jmb.2005.04.062
Recombinant plant gamma carbonic anhydrase homotrimers bind inorganic carbon.2009 · DOI: 10.1016/j.febslet.2009.09.055
At5g66510 Enzyme involved in the catabolism of H(2)CO(3) but that does not mediates the reversible hydration of carbon dioxide. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_008893 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009853 photorespiration Biological Process
GO:0009901 anther dehiscence Biological Process
GO:0070207 protein homotrimerization Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009536 plastid Cellular Component
GO:0031966 mitochondrial membrane Cellular Component
GO:0045271 respiratory chain complex I Cellular Component
GO:0004089 carbonate dehydratase activity Molecular Function
GO:0042802 identical protein binding Molecular Function
KEGG gene cross-reference
ath:AT1G19580
ath:AT1G47260
ath:AT5G66510
ddi:DDB_G0288155
mja:MJ_0304
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.880
Rank 1 · TkA03G315460 · TK1151
Cytoplasm0.121
Rank 2 · TkA03G315460 · TK1151
Nucleus0.064
Rank 3 · TkA03G315460 · TK1151
Cell membrane0.036
Rank 4 · TkA03G315460 · TK1151
Plastid0.036
Rank 5 · TkA03G315460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00132Hexapep56-87 aa
PF25087GMPPB_C56-138 aa
PF25084LbH_EIF2B58-86 aa
PF25247LbH_GLGC73-179 aa
PF21711DCTN579-193 aa
PF16314DUF495487-145 aa
PF25084LbH_EIF2B91-176 aa
PF00132Hexapep92-106 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G315460PF00132Hexapep56876.2e-1864.4
TkA03G315460PF25087GMPPB_C561381.2e-0629.0
TkA03G315460PF25084LbH_EIF2B58869.4e-0832.7
TkA03G315460PF25247LbH_GLGC731790.2711.9
TkA03G315460PF21711DCTN5791930.0003321.1
TkA03G315460PF16314DUF4954871450.09512.0
TkA03G315460PF25084LbH_EIF2B911769.4e-0832.7
TkA03G315460PF00132Hexapep921066.2e-1864.4
TkA03G315460PF14602Hexapep_292992.1e-0731.3
TkA03G315460PF24894Hexapep_GlmU1151690.01516.2
TkA03G315460PF00132Hexapep1181366.2e-1864.4
TkA03G315460PF25087GMPPB_C1181771.2e-0629.0
TkA03G315460PF14602Hexapep_21191472.1e-0731.3
TkA03G315460PF16314DUF49541212280.09512.0
TkA03G315460PF18836B_solenoid_ydck1221360.06214.0
TkA03G315460PF00132Hexapep1361706.2e-1864.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FWR5Arabidopsis thalianasp|Q9FWR5|GCA1_ARATH Gamma carbonic anhydrase 1, mitochondrial76.900%Swiss-ProtHigh
Q9C6B3Arabidopsis thalianasp|Q9C6B3|GCA2_ARATH Gamma carbonic anhydrase 2, mitochondrial69.200%Swiss-ProtHigh
Q94AU7Arabidopsis thalianasp|Q94AU7|GCA3_ARATH Gamma carbonic anhydrase 3, mitochondrial61.100%Swiss-ProtHigh

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