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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G314380
Reference: TK1151 Chr: Chr03 Coordinates: 77204709-77210324 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2099 bp · TkA03G314380|TK1151|cDNA

AAGTTTAAATATGTAATCTTTTACTGGACAGGTACATCGTACTGCATGCACCGAAGTCAAGAAAATTTTGGACGAAGTAGCCCATATATTTACAGCCCTCGAGTCAGCTCGAGCACGATGCCAGTCAGGATTAGAACTATTGTGCTCGTTACATCACTACATGAAAAAATGCAAGTGGCTCCTTCGACATTGTTCCGAGTCGAGTAAACTTTACTTGGCAATCAGTGGAGATATAATAATTTTGAGGTGCGAAAGGATTC...

CDS

Download CDS FASTA

1776 bp · TkA03G314380|TK1151|CDS

ATGAAAAAATGCAAGTGGCTCCTTCGACATTGTTCCGAGTCGAGTAAACTTTACTTGGCAATCAGTGGAGATATAATAATTTTGAGGTGCGAAAGGATTCGGAATTGTTTTGAATGTTATTTGACCCTACTTCAAAGAATGGTCGAACCCACATTGGCTGCTAGAATATCCCAAATTGTTACTTACATCAAAAGTGTCTCCTTTACTTTAGATACCTCTGATGATGAAGCCGGTAAAATTTTACTGTTTTTACTCCATCG...

Protein

Download Protein FASTA

591 aa · TkA03G314380|TK1151|PROTEIN

MKKCKWLLRHCSESSKLYLAISGDIIILRCERIRNCFECYLTLLQRMVEPTLAARISQIVTYIKSVSFTLDTSDDEAGKILLFLLHRDIAASKSDNLEEIKAFKFAAFRLQITSRLALMIEKRSIRNLLTKITDSDPAKRKILNYLLYLTRKYGKLIKEGETHPQGDDIGIDIDIDMDVFDSHKPPMNFKNRRLTMISSSSSVPSFTSCLQDLNLQVDHVSFPSSDTNSQNCLLDCEIQKESERFDCNVESKDNGTSLFI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G314380
TK1151 IDTkA03G314380
OH-1004 IDLXL04_013745
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)29.900
Protein coverage (%)TK1151 91.032 / OH-1004 84.366
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G314380
LocationChr03:77204709-77210324 (+)
DescriptionSimilar to PUB5: U-box domain-containing protein 5
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g36550 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g24330 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g27910 Functions as an E3 ubiquitin ligase. No verified direct reference in this release
At1g67530 Functions as an E3 ubiquitin ligase. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013745 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007166 cell surface receptor signaling pathway Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050777 negative regulation of immune response Biological Process
GO:2000028 regulation of photoperiodism, flowering Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G24330
ath:AT1G27910
ath:AT1G67530
ath:AT3G46510
ath:AT4G36550
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.421
Rank 1 · TkA03G314380 · TK1151
Cell membrane0.347
Rank 2 · TkA03G314380 · TK1151
Nucleus0.334
Rank 3 · TkA03G314380 · TK1151
Endoplasmic reticulum0.068
Rank 4 · TkA03G314380 · TK1151
Golgi apparatus0.046
Rank 5 · TkA03G314380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19584MCAfunc2-76 aa
PF27789IL-938-66 aa
PF01335DED80-99 aa
PF03202Lipoprotein_1092-115 aa
PF25589DUF7935101-147 aa
PF27789IL-9228-233 aa
PF21386IntS11_C237-257 aa
PF03202Lipoprotein_10277-335 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G314380PF19584MCAfunc2760.1412.6
TkA03G314380PF27789IL-938664.28.4
TkA03G314380PF01335DED80990.1513.1
TkA03G314380PF03202Lipoprotein_10921150.1812.9
TkA03G314380PF25589DUF79351011470.08813.0
TkA03G314380PF27789IL-92282334.28.4
TkA03G314380PF21386IntS11_C2372570.1413.2
TkA03G314380PF03202Lipoprotein_102773350.1812.9
TkA03G314380PF25598ARM_PUB3453756.3e-0729.8
TkA03G314380PF01335DED3464180.1513.1
TkA03G314380PF11841ELMO_ARM3533920.003218.1
TkA03G314380PF24768ARM_ARMC53565086.9e-0729.7
TkA03G314380PF04078Rcd13593990.1712.0
TkA03G314380PF25598ARM_PUB3825366.3e-0729.8
TkA03G314380PF11841ELMO_ARM3854960.003218.1
TkA03G314380PF04078Rcd13924330.1712.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O23225Arabidopsis thalianasp|O23225|PUB5_ARATH U-box domain-containing protein 527.900%Swiss-ProtLow
O48700Arabidopsis thalianasp|O48700|PUB6_ARATH U-box domain-containing protein 634.000%Swiss-ProtLow
Q9C7G1Arabidopsis thalianasp|Q9C7G1|PUB45_ARATH U-box domain-containing protein 4522.700%Swiss-ProtLow
Q9CAG5Arabidopsis thalianasp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 734.000%Swiss-ProtLow

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