TkA03G306170 | RubberDandelionOmics

Gene overview

TkA03G306170

Reference: TK1151 Chr: Chr03 Coordinates: 75288782-75289189 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

303 bp · TkA03G306170|TK1151|cDNA

ATGCCTACAAACCTAGTAGTCTCATTTCTTACTCATTTGAAATGGGCACTTGAATTCTTGACTCATCATATTTTTTTCCACCACCGTATGGTTGGTGTACAGCTGGAGAACCACCACCATGGTGGTGGCGGAGGTGCATCCCCTTTTGATGAGGTAGAACGTACCACGTGTCCTTCGTGTCATGATAATTTGGCCAAGATTGATAGTGGACATGGTCGGATAATTGGTGGCTGGGAAGTGCTTTATTTTGATTATTGTAA...

CDS

Download CDS FASTA

303 bp · TkA03G306170|TK1151|CDS

ATGCCTACAAACCTAGTAGTCTCATTTCTTACTCATTTGAAATGGGCACTTGAATTCTTGACTCATCATATTTTTTTCCACCACCGTATGGTTGGTGTACAGCTGGAGAACCACCACCATGGTGGTGGCGGAGGTGCATCCCCTTTTGATGAGGTAGAACGTACCACGTGTCCTTCGTGTCATGATAATTTGGCCAAGATTGATAGTGGACATGGTCGGATAATTGGTGGCTGGGAAGTGCTTTATTTTGATTATTGTAA...

Protein

Download Protein FASTA

100 aa · TkA03G306170|TK1151|PROTEIN

MPTNLVVSFLTHLKWALEFLTHHIFFHHRMVGVQLENHHHGGGGGASPFDEVERTTCPSCHDNLAKIDSGHGRIIGGWEVLYFDYCNACPDGDYGSWWLR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G306170`
TK1151 ID	TkA03G306170
OH-1004 ID	LXL04_008946
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	68.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G306170`
Location	Chr03:75288782-75289189 (-)
Description	Similar to SPBP4H10.07: Uncharacterized RING finger protein P4H10.07 (Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_008946` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006511 ubiquitin-dependent protein catabolic process Biological Process GO:0006970 response to osmotic stress Biological Process GO:0009416 response to light stimulus Biological Process GO:0009651 response to salt stress Biological Process GO:0009687 abscisic acid metabolic process Biological Process GO:0009688 abscisic acid biosynthetic process Biological Process GO:0009739 response to gibberellin Biological Process GO:0016567 protein ubiquitination Biological Process GO:0033591 response to L-ascorbic acid Biological Process GO:0042742 defense response to bacterium Biological Process GO:0098542 defense response to other organism Biological Process GO:0005576 extracellular region Cellular Component
KEGG gene cross-reference	ath:AT1G22500 ath:AT1G72220 ath:AT2G04240 ath:AT3G05200 spo:2541304 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

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Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.288

Rank 1 · TkA03G306170 · TK1151

Cytoplasm0.259

Rank 2 · TkA03G306170 · TK1151

Endoplasmic reticulum0.131

Rank 3 · TkA03G306170 · TK1151

Extracellular0.127

Rank 4 · TkA03G306170 · TK1151

Mitochondrion0.126

Rank 5 · TkA03G306170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13453Zn_ribbon_TFIIB56-69 aa

PF13453Zn_ribbon_TFIIB83-89 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G306170	`PF13453`	Zn_ribbon_TFIIB	56	69	0.13	12.4
TkA03G306170	`PF13453`	Zn_ribbon_TFIIB	83	89	0.13	12.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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