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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G275820
Reference: TK1151 Chr: Chr03 Coordinates: 68085856-68090981 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2879 bp · TkA03G275820|TK1151|cDNA

GAAAGTCCAAAGATAACTGCGTGTGAGCCTGTGCGCGTGGAACTTTGTTGTGTGGCGGCGACTTTTCCACAAAATGATGAAAATTGGAAACACAGTTGATTGCTCTCCACCATCCAAAATTTTATAATACGACTTCCTTCAACTAAATATCCATTACAAAATTCGAAAAGACAGCTCTGCCTCTCGGATTATGTATGTCGCCTTCATAAACACACACATACACATGCATTCGCTCGTCTATTGAATTTCGAATTGCTACA...

CDS

Download CDS FASTA

2205 bp · TkA03G275820|TK1151|CDS

ATGGATGAAGTAAAAGTTGTCGAAGAGGGTTCAACTACAAATGGTGACACTTCAACAAATATACTAAATGATAAACCCATTCTAAGTCCCTCAGTTGTAAAGAATCCATTTGAAGGACCAGAAACAAAACAAGAAACCTCCATTGACAATCTTCCAAAAACTACAGAATCAAAACCTGATAATTTCCCAAAAGAAAAAGATACTCCCATGGTTGACTCTCTTCTTCAAGAAGCAGTTTTATCACCTGTTCCATTAGAAAC...

Protein

Download Protein FASTA

734 aa · TkA03G275820|TK1151|PROTEIN

MDEVKVVEEGSTTNGDTSTNILNDKPILSPSVVKNPFEGPETKQETSIDNLPKTTESKPDNFPKEKDTPMVDSLLQEAVLSPVPLETCAQKPNDQESPLPLAKGENEDRLVVSNDDSVKQAKNVGPKVGDIDTAAPFESVKEAVSKFGGIVDWKAHKVQTVEKRKYIEQELEKANEEIPIFKKKSEEAEEAKQQVLKEVNNTKRLIEELKLNLERAQTEEHQAKQDSELVKLRVQEMEQGITHDSSEAAKAQLQVAQSRH...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G275820
TK1151 IDTkA03G275820
OH-1004 IDLXL04_031684
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)52.400
Protein coverage (%)TK1151 76.567 / OH-1004 52.878
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G275820
LocationChr03:68085856-68090981 (-)
DescriptionSimilar to WEB1: Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g26570 Required for the chloroplast avoidance response under high intensity blue light.
Two interacting coiled-coil proteins, WEB1 and PMI2, maintain the chloroplast photorelocation movement velocity in Arabidopsis.2010 · DOI: 10.1073/pnas.1007836107
At1g45545 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 2. No verified direct reference in this release
At5g42880 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 3. No verified direct reference in this release
At4g33390 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1. No verified direct reference in this release
At1g12150 WEB family protein At1g12150. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_031684 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009903 chloroplast avoidance movement Biological Process
GO:0009904 chloroplast accumulation movement Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0005829 cytosol Cellular Component
KEGG gene cross-reference
ath:AT1G45545
ath:AT2G26570
ath:AT2G38370
ath:AT4G33390
ath:AT5G42880
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.464
Rank 1 · TkA03G275820 · TK1151
Cell membrane0.403
Rank 2 · TkA03G275820 · TK1151
Nucleus0.244
Rank 3 · TkA03G275820 · TK1151
Plastid0.059
Rank 4 · TkA03G275820 · TK1151
Endoplasmic reticulum0.051
Rank 5 · TkA03G275820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24423OVT143-67 aa
PF05701WEMBL130-661 aa
PF24423OVT1181-239 aa
PF28982INF24-like203-230 aa
PF24423OVT1250-311 aa
PF24423OVT1352-364 aa
PF24423OVT1353-426 aa
PF22690FAS_AT_central442-489 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G275820PF24423OVT143670.02515.7
TkA03G275820PF05701WEMBL1306613.6e-204680.4
TkA03G275820PF24423OVT11812390.02515.7
TkA03G275820PF28982INF24-like2032302.09.4
TkA03G275820PF24423OVT12503110.02515.7
TkA03G275820PF24423OVT13523640.02515.7
TkA03G275820PF24423OVT13534260.02515.7
TkA03G275820PF22690FAS_AT_central4424890.1412.9
TkA03G275820PF28982INF24-like4635022.09.4
TkA03G275820PF24423OVT14714900.02515.7
TkA03G275820PF24423OVT14945220.02515.7
TkA03G275820PF22690FAS_AT_central5145320.1412.9
TkA03G275820PF28982INF24-like5335632.09.4
TkA03G275820PF24423OVT16166290.02515.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O48724Arabidopsis thalianasp|O48724|WEB1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 145.100%Swiss-ProtMedium
Q9C638Arabidopsis thalianasp|Q9C638|WEL2_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 235.200%Swiss-ProtMedium
Q9FMN1Arabidopsis thalianasp|Q9FMN1|WEL3_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 336.700%Swiss-ProtMedium
Q9SZB6Arabidopsis thalianasp|Q9SZB6|WEL1_ARATH Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 134.500%Swiss-ProtMedium
Q9FWW5Arabidopsis thalianasp|Q9FWW5|Y1215_ARATH WEB family protein At1g1215028.900%Swiss-ProtLow

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