TkA03G271340 | RubberDandelionOmics

Gene overview

TkA03G271340

Reference: TK1151 Chr: Chr03 Coordinates: 67099836-67103632 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1176 bp · TkA03G271340|TK1151|cDNA

CAAGTGGGAACCATATAGTAGGTTGTGAATTGGAATAAATAAGTACTAGAATAATTGATTCCATGGTTTCTAGACGGGCTAAATGCTTCTACTTTACGATACCCCACACCCACCACATCAACTACCATGCTCCATTTGCTTTTTGTCTACGCATATCTATCTATCTTCTCCGCCATTACCCTCGTGAATGCCGACGACGGAAAGGCCATTTTTCTTCTCGCCGGTCAGAGCAACATGGCCGGCCGTGGCGGAGTAGTCAA...

CDS

Download CDS FASTA

837 bp · TkA03G271340|TK1151|CDS

ATGCTCCATTTGCTTTTTGTCTACGCATATCTATCTATCTTCTCCGCCATTACCCTCGTGAATGCCGACGACGGAAAGGCCATTTTTCTTCTCGCCGGTCAGAGCAACATGGCCGGCCGTGGCGGAGTAGTCAATGATAAATGGGACGGTTACGTTCCTCCCCAGTCTTCCCCCAATCCGGCAATTCTCCGCCTCAGCGCTGATCTCAACTGGCAACCGGCGACGGAGCCTCTCCACCGTGACATTGACTACTTCAGAGC...

Protein

Download Protein FASTA

278 aa · TkA03G271340|TK1151|PROTEIN

MLHLLFVYAYLSIFSAITLVNADDGKAIFLLAGQSNMAGRGGVVNDKWDGYVPPQSSPNPAILRLSADLNWQPATEPLHRDIDYFRACGVGPGMAFANMLLQQNPSIGTVGLVPCAVGGTNISEWARGGQLYNQLIRRSEAALQGGGAIKGLLWYQGESDTVSREDAELYQRRLERFFDHVRHDLLLPALPIIQVALASGAGPYIERVREAQLQMWLMNLRTVDAKGLGLEPDRLHLTTASQVTLGEMLAHAFPQDHPSL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G271340`
TK1151 ID	TkA03G271340
OH-1004 ID	LXL04_008071
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	57.800
Protein coverage (%)	TK1151 82.014 / OH-1004 81.272 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G271340

Location Chr03:67099836-67103632 (+)

Description Similar to At4g34215: Probable carbohydrate esterase At4g34215

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g34215`	Probable carbohydrate esterase At4g34215.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008071 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0019752 carboxylic acid metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005829 cytosol Cellular Component

GO:0016787 hydrolase activity Molecular Function

GO:0052689 carboxylic ester hydrolase activity Molecular Function

KEGG gene cross-reference

ath:AT4G34215

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.406

Rank 1 · TkA03G271340 · TK1151

Cytoplasm0.270

Rank 2 · TkA03G271340 · TK1151

Peroxisome0.167

Rank 3 · TkA03G271340 · TK1151

Nucleus0.134

Rank 4 · TkA03G271340 · TK1151

Plastid0.090

Rank 5 · TkA03G271340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03629SASA26-253 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G271340	`PF03629`	SASA	26	253	5e-90	301.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8L9J9`	Arabidopsis thaliana	sp\|Q8L9J9\|CAES_ARATH Probable carbohydrate esterase At4g34215	56.200%	Swiss-Prot	High

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