TkA03G227260 | RubberDandelionOmics

Gene overview

TkA03G227260

Reference: TK1151 Chr: Chr03 Coordinates: 56798094-56799336 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

471 bp · TkA03G227260|TK1151|cDNA

TACCCACTGGATTGAAGGAATCGTCTCCCTCTAGACAGAAATCGGAATCGTCTCCCTCTACCCAGAAATCGACGCCGACTGCTATGAAGTTCAAGACAGAAATCAGTGCCGATTGTGAAATTGAGAAGGATGTGAAGTTATCGCGGGATATCAAGCGTAAAAACGCCCTTTTAAACTGGAAGTGGGATGCTGTTATTGACCTTGAGGATGATGCTTCAGATGATGGGTGGGATGCTGATGAAGATTATCATTCTGATGAT...

CDS

Download CDS FASTA

321 bp · TkA03G227260|TK1151|CDS

ATGAAGTTCAAGACAGAAATCAGTGCCGATTGTGAAATTGAGAAGGATGTGAAGTTATCGCGGGATATCAAGCGTAAAAACGCCCTTTTAAACTGGAAGTGGGATGCTGTTATTGACCTTGAGGATGATGCTTCAGATGATGGGTGGGATGCTGATGAAGATTATCATTCTGATGATGTTTCGACAGATGGTTCATATGATCAAAGTGAAACCGAACCCACCGCAACACCACCTAAGAAGATCCCTCGCGTTACAGTTCA...

Protein

Download Protein FASTA

106 aa · TkA03G227260|TK1151|PROTEIN

MKFKTEISADCEIEKDVKLSRDIKRKNALLNWKWDAVIDLEDDASDDGWDADEDYHSDDVSTDGSYDQSETEPTATPPKKIPRVTVHKRHRLSRVCKEWDAIGFDV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G227260`
TK1151 ID	TkA03G227260
OH-1004 ID	LXL04_012759
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	87.700
Protein coverage (%)	TK1151 100.000 / OH-1004 22.269 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA03G227260`
Location	Chr03:56798094-56799336 (+)
Description	Similar to MBD9: Methyl-CpG-binding domain-containing protein 9
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_012759` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006351 DNA-templated transcription Biological Process GO:0006355 regulation of DNA-templated transcription Biological Process GO:0010223 secondary shoot formation Biological Process GO:0040029 epigenetic regulation of gene expression Biological Process GO:0048573 photoperiodism, flowering Biological Process GO:0000812 Swr1 complex Cellular Component GO:0005634 nucleus Cellular Component GO:0009506 plasmodesma Cellular Component GO:0004402 histone acetyltransferase activity Molecular Function GO:0008270 zinc ion binding Molecular Function GO:0008327 methyl-CpG binding Molecular Function GO:0042393 histone binding Molecular Function
KEGG gene cross-reference	ath:AT3G01460 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.909

Rank 1 · TkA03G227260 · TK1151

Cytoplasm0.220

Rank 2 · TkA03G227260 · TK1151

Mitochondrion0.025

Rank 3 · TkA03G227260 · TK1151

Cell membrane0.018

Rank 4 · TkA03G227260 · TK1151

Extracellular0.009

Rank 5 · TkA03G227260 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06957COPI_C35-86 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G227260	`PF06957`	COPI_C	35	86	0.3	10.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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