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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G202910
Reference: TK1151 Chr: Chr03 Coordinates: 50965921-50969091 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2216 bp · TkA03G202910|TK1151|cDNA

CTAGAAACCTCCTCATCCGGTCCCGCCTGTCCCTTGGCGGTGGCATCGCCACATTCCACCAAAAGAGTATTATTTCTCGATTCGGTAGCGGATAATCATTGTCATAATTCACTCCTCATCGTCACTGTTTTCTTCCATCTTGCCCCAATTTGATTCGCATGAAAAACATCAACCCTTTTCCGATCGCTGAATAAAAGTCTCGTTTGATTTGACTTGGAAACTAGACGACTTCACGAGTCCAGCTCTTTCACATCTCACTA...

CDS

Download CDS FASTA

1260 bp · TkA03G202910|TK1151|CDS

ATGTCGAATCATTGGGTGTTGTGCAGCTTTCTATGTTTATTGGCTTCCGGGGTGACGGCAAATGTTGTTTTGATGGGGAATAATCTTACTTTAGCTTTTGATGACATCGAAGCTAACTTTGCTCCACCTGTGAAAGGTTCTGGGGAGTGTGGAAGGTTGTTTCTGGCAGAGCCTCTGGATGCTTGTGGAGTTTTGAGTAATAAAACAGTTAAAGGCAGCATAAAACAGGCGTTTGTTTTAATAGTTAGAGGAGGATGTAG...

Protein

Download Protein FASTA

419 aa · TkA03G202910|TK1151|PROTEIN

MSNHWVLCSFLCLLASGVTANVVLMGNNLTLAFDDIEANFAPPVKGSGECGRLFLAEPLDACGVLSNKTVKGSIKQAFVLIVRGGCSFEDKVRRAQSAGFKAAIVYNNDDTDLVAMAGNSGGIAIHAVFVSKSSGLKLSKYAGIPSLELWIIPSYENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPHASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSATCAICLEDYNVGDKLRILPCRHKFHTICVDAW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G202910
TK1151 IDTkA03G202910
OH-1004 IDLXL04_007661
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G202910
LocationChr03:50965921-50969091 (-)
DescriptionSimilar to RMR2: Receptor homology region, transmembrane domain- and RING domain-containing protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71980 Involved in the trafficking of vacuolar proteins. No verified direct reference in this release
At4g09560 Involved in the trafficking of vacuolar proteins. No verified direct reference in this release
At1g35630 Involved in the trafficking of vacuolar proteins. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0167500 Involved in the trafficking of vacuolar proteins. No verified direct reference in this release
Os08g0104300 Involved in the trafficking of vacuolar proteins. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007661 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0015031 protein transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0000326 protein storage vacuole Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0012505 endomembrane system Cellular Component
GO:0032586 protein storage vacuole membrane Cellular Component
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G35630
ath:AT1G71980
ath:AT4G09560
dosa:Os03g0167500
dosa:Os08g0104300
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.396
Rank 1 · TkA03G202910 · TK1151
Cytoplasm0.250
Rank 2 · TkA03G202910 · TK1151
Golgi apparatus0.215
Rank 3 · TkA03G202910 · TK1151
Endoplasmic reticulum0.201
Rank 4 · TkA03G202910 · TK1151
Cell membrane0.153
Rank 5 · TkA03G202910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02225PA58-138 aa
PF01655Ribosomal_L32e79-127 aa
PF22185AF_0924207-255 aa
PF22191IBR_1218-237 aa
PF13920zf-C3HC4_3228-275 aa
PF13639zf-RING_2229-272 aa
PF17123zf-RING_11230-257 aa
PF00097zf-C3HC4230-271 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G202910PF02225PA581381.1e-1455.0
TkA03G202910PF01655Ribosomal_L32e791270.2612.3
TkA03G202910PF22185AF_09242072550.1113.1
TkA03G202910PF22191IBR_12182378.37.1
TkA03G202910PF13920zf-C3HC4_32282750.002818.1
TkA03G202910PF13639zf-RING_22292723.2e-1350.4
TkA03G202910PF17123zf-RING_112302577.9e-1142.2
TkA03G202910PF00097zf-C3HC42302712.1e-0731.4
TkA03G202910PF13923zf-C3HC4_22302713.5e-0627.4
TkA03G202910PF13445zf-RING_UBOX2302692.1e-0525.1
TkA03G202910PF14634zf-RING_52302730.0002821.5
TkA03G202910PF14447Prok-RING_42302740.02415.2
TkA03G202910PF14570zf-RING_42302730.08413.4
TkA03G202910PF12678zf-rbx12312726.3e-0523.9
TkA03G202910PF12861zf-ANAPC112402750.005617.4
TkA03G202910PF23413zf_RING_Vps8_fungal2442580.311.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VZ14Arabidopsis thalianasp|Q8VZ14|RMR2_ARATH Receptor homology region, transmembrane domain- and RING domain-containing protein 259.700%Swiss-ProtHigh
Q0WPW5Arabidopsis thalianasp|Q0WPW5|RMR4_ARATH Receptor homology region, transmembrane domain- and RING domain-containing protein 446.700%Swiss-ProtMedium
F4HZZ5Arabidopsis thalianasp|F4HZZ5|RMR5_ARATH Receptor homology region, transmembrane domain- and RING domain-containing protein 552.900%Swiss-ProtMedium
Q10R93Oryza sativa subsp. japonicasp|Q10R93|RMR1_ORYSJ Receptor homology region, transmembrane domain- and RING domain-containing protein 158.700%Swiss-ProtHigh
Q69U49Oryza sativa subsp. japonicasp|Q69U49|RMR2_ORYSJ Receptor homology region, transmembrane domain- and RING domain-containing protein 256.900%Swiss-ProtHigh

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