Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2222 bp · TkA03G202550|TK1151|cDNA
GTAATTTGTCCCAATCGTGAACGTGCATTGTTTCAACACAACCAAAACCAACTTCATTATCTATTCAGACTGCCGTGTTCCCTCTCTATTACAAGGATCCCCATCTGATCTGAGGACAGAAGCGATCAAACGCCCATCGGATCTAACAAGGTGAACCAGCGAGGAAATAACAAGTAAACTACTGCTGCGATATTCGTGTTTATATAACATTCTATCAATCCATAGCAGCATCCAGATCCATCTATCTATGTGATCTCTAT...
1470 bp · TkA03G202550|TK1151|CDS
ATGGGAGTTGCACAAAAGGATAACGGCATGGAGGAGGCAACACTTGAGATTGGAATGGAATACAGAACTGTCTCTGGAGTTGCTGGACCGCTGGTAATCCTTGATAAAGTGAAGGGACCAAAGTATCAAGAAATTGTGAACATCCGCTTAGGAGATGGAACAACTAGACGTGGTCAAGTCTTGGAAGTTGATGGAGAGAAGGCTGTTGTTCAGGTTTTTGAAGGAACATCCGGAATTGACAATAAATTCACCACTGTTCA...
Protein
Download Protein FASTA489 aa · TkA03G202550|TK1151|PROTEIN
MGVAQKDNGMEEATLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSMDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTENLLESGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTT...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G202550 |
|---|---|
| TK1151 ID | TkA03G202550 |
| OH-1004 ID | LXL04_007647 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G202550 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr03:50854502-50858377 (+) | |||||||||
| Description | Similar to V-type proton ATPase subunit B 1 | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0007035 vacuolar acidification Biological Process GO:0030835 negative regulation of actin filament depolymerization Biological Process GO:0046034 ATP metabolic process Biological Process GO:0051017 actin filament bundle assembly Biological Process GO:0051693 actin filament capping Biological Process GO:1902600 proton transmembrane transport Biological Process GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain Cellular Component GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005773 vacuole Cellular Component GO:0005794 Golgi apparatus Cellular Component GO:0005829 cytosol Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT1G20260 ath:AT4G38510 ghi:107890851 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF02874ATP-synt_ab_N24-90 aaPF20297MSSS55-72 aaPF00006ATP-synt_ab147-378 aaPF22919ATP-synt_VA_C217-239 aaPF22919ATP-synt_VA_C384-483 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G202550 | PF02874 | ATP-synt_ab_N | 24 | 90 | 1.3e-15 | 58.3 |
| TkA03G202550 | PF20297 | MSSS | 55 | 72 | 0.24 | 11.8 |
| TkA03G202550 | PF00006 | ATP-synt_ab | 147 | 378 | 1.2e-75 | 254.5 |
| TkA03G202550 | PF22919 | ATP-synt_VA_C | 217 | 239 | 2.9e-34 | 117.8 |
| TkA03G202550 | PF22919 | ATP-synt_VA_C | 384 | 483 | 2.9e-34 | 117.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.