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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G195740
Reference: TK1151 Chr: Chr03 Coordinates: 49165168-49178594 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2745 bp · TkA03G195740|TK1151|cDNA

GTTTGGTAAATATTTGGGATCTTGGAGGTTCAAATATTCATCTAATTTACCAGGACTTGGGAGTCGTATCACGTATGGTAACAAATACTTCGTGACATTCGTCCACGGCAAAAAATAACTGCTGCCGCCCTTTTGGCCTCTCAAGAACATTTGGTCTCGTGGCACTGACTGCAAACTCAACTCGGTACTGCAAGGATAAGGAAGACAGGAGGAAAAGACGGATGGAAATGGTGTCTCTATGCTCTTCTGACAAAACCCTA...

CDS

Download CDS FASTA

2520 bp · TkA03G195740|TK1151|CDS

ATGGAAATGGTGTCTCTATGCTCTTCTGACAAAACCCTAGTTCAACCTTTCTCTTTATTTTCATCTTCCCATGTTTTCTTTCCTAAGTTCGTTCGATTAAAGGCCAACAGGACAAATATCACTTATCATGGCAAATATTGTCTCAAAATTAGGGCTTCCTCGTCTTCGACTTCTGTGGTGTCCTCAGCTACCCCCCAAAATGAAGACGCGGAGTCTTTGCAGCTGTTTGAGAAACTGAAGGAGAGAGAGAAAGAGCGTAT...

Protein

Download Protein FASTA

839 aa · TkA03G195740|TK1151|PROTEIN

MEMVSLCSSDKTLVQPFSLFSSSHVFFPKFVRLKANRTNITYHGKYCLKIRASSSSTSVVSSATPQNEDAESLQLFEKLKEREKERINKLEELDRKANTQLERQLVMASNWSRTLLTIQQKLKGTEWDPENSHRIAYSEFLSLLNSKNVQYMEYSNYGQTVSVILPHYKEGVTKSESEKDIVFKRHIVDRMPIDSWNDIWGKLHQQLVNVDVVNVNSIPSEVYSSVATIVVWSMRLALAIGLYVWIDNIMRPIYAKLIPC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G195740
TK1151 IDTkA03G195740
OH-1004 IDLXL04_020131
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)39.100
Protein coverage (%)TK1151 55.304 / OH-1004 64.503
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G195740
LocationChr03:49165168-49178594 (-)
DescriptionSimilar to FTSH2: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g64580 Functions in chloroplast biogenesis and chloroplast division.
FtsHi4 is essential for embryogenesis due to its influence on chloroplast development in Arabidopsis.2014 · DOI: 10.1371/journal.pone.0099741

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_020131 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0009658 chloroplast organization Biological Process
GO:0010027 thylakoid membrane organization Biological Process
GO:0010205 photoinhibition Biological Process
GO:0010206 photosystem II repair Biological Process
GO:0010304 PSII associated light-harvesting complex II catabolic process Biological Process
GO:0030163 protein catabolic process Biological Process
GO:0048564 photosystem I assembly Biological Process
GO:0072593 reactive oxygen species metabolic process Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005777 peroxisome Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G06430
ath:AT2G30950
ath:AT5G15250
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.864
Rank 1 · TkA03G195740 · TK1151
Mitochondrion0.116
Rank 2 · TkA03G195740 · TK1151
Nucleus0.050
Rank 3 · TkA03G195740 · TK1151
Cytoplasm0.044
Rank 4 · TkA03G195740 · TK1151
Cell membrane0.026
Rank 5 · TkA03G195740 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01434Peptidase_M4153-103 aa
PF17675APG6_N59-154 aa
PF13086AAA_1164-103 aa
PF00004AAA67-120 aa
PF05062RICH70-102 aa
PF21607FabD_helical_ins88-107 aa
PF06480FtsH_ext128-209 aa
PF20720nSTAND3288-318 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G195740PF01434Peptidase_M41531030.03614.6
TkA03G195740PF17675APG6_N591540.07214.2
TkA03G195740PF13086AAA_11641030.1113.0
TkA03G195740PF00004AAA671203e-42144.9
TkA03G195740PF05062RICH701024.68.4
TkA03G195740PF21607FabD_helical_ins881071.110.3
TkA03G195740PF06480FtsH_ext1282090.00119.9
TkA03G195740PF20720nSTAND32883180.001319.2
TkA03G195740PF00910RNA_helicase2953210.09713.9
TkA03G195740PF05496RuvB_N2984031.8e-0628.5
TkA03G195740PF06068TIP493033690.0007319.5
TkA03G195740PF05062RICH3053274.68.4
TkA03G195740PF06745ATPase3253510.1212.4
TkA03G195740PF02367TsaE3283580.1412.8
TkA03G195740PF13191AAA_163313870.0004821.4
TkA03G195740PF00158Sigma54_activat3333550.1212.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4KF14Arabidopsis thalianasp|F4KF14|FTSI4_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 4, chloroplastic80.000%Swiss-ProtHigh

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