TkA03G184030 | RubberDandelionOmics

Gene overview

TkA03G184030

Reference: TK1151 Chr: Chr03 Coordinates: 46317284-46320887 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1817 bp · TkA03G184030|TK1151|cDNA

AAGAAAATAAAGCAGGGGTATATCAAGGAATGGAATCAAACCGTAGGTGATTGCCAGTGAGACTGGTCGATGAGCACGTAGCACCTATTACAGAAATGGAATCGCACAGAACAAAGCGGTACCTTTTGTAGAATCGATACAATCGTAATACCCACTTCAAGAGAGGAACATCAATCCATATTTGAGAGAAAGAAATCGATGGGCGGCGGAGGAGGTGCTGGAGGTGTCCGTGGAATTCTGCTGGACAGCTCTGTAATCTT...

CDS

Download CDS FASTA

1509 bp · TkA03G184030|TK1151|CDS

ATGGGCGGCGGAGGAGGTGCTGGAGGTGTCCGTGGAATTCTGCTGGACAGCTCTGTAATCTTGGACTCCACCTCAAACGACAATGAAACTGCATCAATTCGCTCCGGTGCTGACTATTTACTTGGCAAGCTTCGACATTCCAACATTCCGACGGGAATATGTTATGAAGTAGGTCTCCCAGAACCAAAGGTGAAGCTTCTTGAGAAGCTGATTAGTGAATACTCATTTGAGGGATTCATCTACAATCAATCTTCTATAGA...

Protein

Download Protein FASTA

502 aa · TkA03G184030|TK1151|PROTEIN

MGGGGGAGGVRGILLDSSVILDSTSNDNETASIRSGADYLLGKLRHSNIPTGICYEVGLPEPKVKLLEKLISEYSFEGFIYNQSSIDDTVNDVSKAWGKNGGSILHVVLNNYEGLFSNVTNSGWMNVVVNVDGDGLSKNPNGICIEKLEELPMIISELNKKSNEDNVVVGYIMKPSREADFAKRGAFPLNPTKNGLIFLPLTFNLPILPQLKKVDIIIHKATDEISSIERSNSFNSSSKIIYTTGMLELQRCIGELPDCC...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G184030`
TK1151 ID	TkA03G184030
OH-1004 ID	LXL04_007490
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.600
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G184030

Location Chr03:46317284-46320887 (+)

Description Similar to ITPK4: Inositol 1,3,4-trisphosphate 5/6-kinase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g43980`	Kinase that can phosphorylate the inositol polyphosphate Ins(1,3,4)P3 to form InsP4.	Arabidopsis thaliana inositol 1,3,4-trisphosphate 5/6-kinase 4 (AtITPK4) is an outlier to a family of ATP-grasp fold proteins from Arabidopsis.2007 · DOI: 10.1016/j.febslet.2007.07.046

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0518700`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds.	No verified direct reference in this release
`UniProt: B8BDK0`	Kinase that can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3 and participates in phytic acid biosynthesis in developing seeds.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007490 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010264 myo-inositol hexakisphosphate biosynthetic process Biological Process

GO:0032957 inositol trisphosphate metabolic process Biological Process

GO:0070266 necroptotic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0016324 apical plasma membrane Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0000825 inositol-1,3,4,5-tetrakisphosphate 6-kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0016787 hydrolase activity Molecular Function

GO:0016853 isomerase activity Molecular Function

GO:0047325 inositol-3,4,5,6-tetrakisphosphate 1-kinase activity Molecular Function

KEGG gene cross-reference

ath:AT2G43980

dosa:Os09g0518700

dre:406290

mmu:217837

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.569

Rank 1 · TkA03G184030 · TK1151

Nucleus0.410

Rank 2 · TkA03G184030 · TK1151

Cell membrane0.083

Rank 3 · TkA03G184030 · TK1151

Endoplasmic reticulum0.061

Rank 4 · TkA03G184030 · TK1151

Lysosome / Vacuole0.050

Rank 5 · TkA03G184030 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28688HAD_ITPK4_N8-161 aa

PF17927Ins134_P3_kin_N168-268 aa

PF17927Ins134_P3_kin_N282-324 aa

PF05770Ins134_P3_kin294-481 aa

PF28688HAD_ITPK4_N380-409 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G184030	`PF28688`	HAD_ITPK4_N	8	161	1.1e-55	188.6
TkA03G184030	`PF17927`	Ins134_P3_kin_N	168	268	0.0046	18.1
TkA03G184030	`PF17927`	Ins134_P3_kin_N	282	324	0.0046	18.1
TkA03G184030	`PF05770`	Ins134_P3_kin	294	481	7.6e-27	94.9
TkA03G184030	`PF28688`	HAD_ITPK4_N	380	409	1.1e-55	188.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80568`	Arabidopsis thaliana	sp\|O80568\|ITPK4_ARATH Inositol 1,3,4-trisphosphate 5/6-kinase 4	52.300%	Swiss-Prot	High
`Q0J0B2`	Oryza sativa subsp. japonica	sp\|Q0J0B2\|ITPK6_ORYSJ Inositol-tetrakisphosphate 1-kinase 6	48.300%	Swiss-Prot	Medium
`B8BDK0`	Oryza sativa subsp. indica	sp\|B8BDK0\|ITPK6_ORYSI Inositol-tetrakisphosphate 1-kinase 6	48.100%	Swiss-Prot	Medium

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