TkA03G178690 | RubberDandelionOmics

Gene overview

TkA03G178690

Reference: TK1151 Chr: Chr03 Coordinates: 45108658-45112410 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2858 bp · TkA03G178690|TK1151|cDNA

CGACTTAAAAGCTAAGAATCCACCGTTGTGGATTTCTTAAAAATCACAGAGAAATACACCTCGTATCTATCGCTTTACAATAACAAATATCTTCATCTATTAGGTTCTCACCCAATAGTGCTCACTCAGCCATGGAGTTGTATTTCTCGTTATTAACAATTGTTGCAGCCATCCTTTCTCTTATTGCACTCCACATCCTCCATTACAGAAAGACGGCAGAGACCAGGAACAATCACAAACCACCACAAGCAAAAGGCGCA...

CDS

Download CDS FASTA

2727 bp · TkA03G178690|TK1151|CDS

ATGGAGTTGTATTTCTCGTTATTAACAATTGTTGCAGCCATCCTTTCTCTTATTGCACTCCACATCCTCCATTACAGAAAGACGGCAGAGACCAGGAACAATCACAAACCACCACAAGCAAAAGGCGCATGGCCAGTAATCGGACACCTACACCTTGTAGGTGGAGCTGAGCTACCACATAAGGTGTTAGGTTCCATGGCAGAAGAACATGGCCCTATCTTCACCATCAAGCTTGGTGTTCATCAAGCTTTGGTGGTGAG...

Protein

Download Protein FASTA

908 aa · TkA03G178690|TK1151|PROTEIN

MELYFSLLTIVAAILSLIALHILHYRKTAETRNNHKPPQAKGAWPVIGHLHLVGGAELPHKVLGSMAEEHGPIFTIKLGVHQALVVSNAKIAKDCLTTNDKTFASRPNLEASKIMGYSYAMFGLAPYGDFWRQVRKMVVHEVLSQRQVEMLGHIRASELRVSIRDIYDGWVKNQMTENSEMVKVEMSQWFGNLIVKIMIRIISGKRLLVNEEEGVRFQGIIRKFFELMGAYLASDFIPFLKKVDVGGYKKAMKNTARDLD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G178690`
TK1151 ID	TkA03G178690
OH-1004 ID	LXL04_008226
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	66.500
Protein coverage (%)	TK1151 51.432 / OH-1004 89.394 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G178690

Location Chr03:45108658-45112410 (+)

Description Similar to CYP82A3: Cytochrome P450 82A3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31940`	Can hydroxylate xanthotoxin (8-methoxypsoralen) to form 5- hydroxyxanthotoxin (5-hydroxy-8-methoxypsoralen) in vivo and in vitro.	In planta biocatalysis screen of P450s identifies 8-methoxypsoralen as a substrate for the CYP82C subfamily, yielding original chemical structures.2008 · DOI: 10.1016/j.chembiol.2008.01.008 Arabidopsis CYP82C4 expression is dependent on Fe availability and circadian rhythm, and correlates with genes involved in the early Fe deficiency response.2011 · DOI: 10.1016/j.jplph.2010.11.020

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_008226 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009699 phenylpropanoid biosynthetic process Biological Process

GO:0009821 alkaloid biosynthetic process Biological Process

GO:0016020 membrane Cellular Component

GO:0004497 monooxygenase activity Molecular Function

GO:0005506 iron ion binding Molecular Function

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Molecular Function

GO:0020037 heme binding Molecular Function

KEGG gene cross-reference

ag:ALG05144

ag:UQZ09627

gmx:100778056

gmx:100789386

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.815

Rank 1 · TkA03G178690 · TK1151

Plastid0.059

Rank 2 · TkA03G178690 · TK1151

Cytoplasm0.044

Rank 3 · TkA03G178690 · TK1151

Cell membrane0.044

Rank 4 · TkA03G178690 · TK1151

Nucleus0.042

Rank 5 · TkA03G178690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00067p45038-475 aa

PF04991LicD227-308 aa

PF10551MULE314-336 aa

PF03108DBD_Tnp_Mut637-703 aa

PF08731AFT642-683 aa

PF08731AFT683-711 aa

PF10551MULE751-799 aa

PF10551MULE836-907 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G178690	`PF00067`	p450	38	475	1.1e-88	298.8
TkA03G178690	`PF04991`	LicD	227	308	0.0044	18.6
TkA03G178690	`PF10551`	MULE	314	336	7.8e-10	39.7
TkA03G178690	`PF03108`	DBD_Tnp_Mut	637	703	1e-08	35.4
TkA03G178690	`PF08731`	AFT	642	683	4.5e-05	24.4
TkA03G178690	`PF08731`	AFT	683	711	4.5e-05	24.4
TkA03G178690	`PF10551`	MULE	751	799	7.8e-10	39.7
TkA03G178690	`PF10551`	MULE	836	907	7.8e-10	39.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SZ46`	Arabidopsis thaliana	sp\|Q9SZ46\|C82C4_ARATH Xanthotoxin 5-hydroxylase CYP82C4	48.700%	Swiss-Prot	Low

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