TkA03G171480 | RubberDandelionOmics

Gene overview

TkA03G171480

Reference: TK1151 Chr: Chr03 Coordinates: 43403128-43406297 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1635 bp · TkA03G171480|TK1151|cDNA

CAGAGTTCTCTCACTCATATAATTTTTCCACAATCTCTGTGATTTCTGACTTCTTTAATCCTGTTCATCAAATTTCGCTCCTCCATTGGGTTTTTAAATCAAACCCAGGCTTGGTTTTTGTTTCAAACCGAGAAGAAATCAGAGATTGGCCGTCGAGAGCTTAGGAAAAAAATGACAAAACAGAAAGTTGTGGTTTCAGAAGCCAAATCCGGAATGGATATGGAGATGACGGTTGTGCCAAAGGCGTTGTTCTCGGCGGA...

CDS

Download CDS FASTA

1119 bp · TkA03G171480|TK1151|CDS

ATGACAAAACAGAAAGTTGTGGTTTCAGAAGCCAAATCCGGAATGGATATGGAGATGACGGTTGTGCCAAAGGCGTTGTTCTCGGCGGAGATGAAGAAGCCGCCGTTGATGCCTGGAGGGTATATTACGATATCAAAGAAAAAGCTGCTTCAAAACCTGGAAATCAACGGTGCGACGAGGATTAACGCTTGGGTGGAATCGATGAGAGCTTCTTCTCCGACGTCTCATCGGAACTCCACTCTAGGTCTCTCACAAGAGTT...

Protein

Download Protein FASTA

372 aa · TkA03G171480|TK1151|PROTEIN

MTKQKVVVSEAKSGMDMEMTVVPKALFSAEMKKPPLMPGGYITISKKKLLQNLEINGATRINAWVESMRASSPTSHRNSTLGLSQELTSWMDRHPSALNMFHEITNASKGKQIVMFLDYDGTLSPIVDDPDQAYMSDAMRATVRKLAGCFPTAIVSGRCRDKVYNFVKLAELYYAGSHGMDIKGPSKGSKYKKSPPSILCQPASEFLPMIDEVYGLLMEKTKSTPGAKVENNKFCLSVHFRCVDEKKWSELAAQVRSVLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G171480`
TK1151 ID	TkA03G171480
OH-1004 ID	LXL04_007421
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	82.300
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G171480

Location Chr03:43403128-43406297 (-)

Description Similar to TPPJ: Probable trehalose-phosphate phosphatase J

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g65140`	Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	No verified direct reference in this release
`At4g39770`	Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	No verified direct reference in this release
`At5g10100`	Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	No verified direct reference in this release
`At2g22190`	Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0409100`	Removes the phosphate from trehalose 6-phosphate to produce free trehalose.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007421 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005992 trehalose biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0005634 nucleus Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004805 trehalose-phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT2G22190

ath:AT4G39770

ath:AT5G10100

ath:AT5G65140

dosa:Os08g0409100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.429

Rank 1 · TkA03G171480 · TK1151

Nucleus0.400

Rank 2 · TkA03G171480 · TK1151

Mitochondrion0.134

Rank 3 · TkA03G171480 · TK1151

Cell membrane0.111

Rank 4 · TkA03G171480 · TK1151

Endoplasmic reticulum0.059

Rank 5 · TkA03G171480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02358Trehalose_PPase116-349 aa

PF08282Hydrolase_3116-182 aa

PF20269CATRA-N230-267 aa

PF08282Hydrolase_3241-319 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G171480	`PF02358`	Trehalose_PPase	116	349	6.4e-77	258.6
TkA03G171480	`PF08282`	Hydrolase_3	116	182	0.013	15.9
TkA03G171480	`PF20269`	CATRA-N	230	267	0.17	12.4
TkA03G171480	`PF08282`	Hydrolase_3	241	319	0.013	15.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q5HZ05`	Arabidopsis thaliana	sp\|Q5HZ05\|TPPJ_ARATH Probable trehalose-phosphate phosphatase J	71.900%	Swiss-Prot	High
`Q8GWG2`	Arabidopsis thaliana	sp\|Q8GWG2\|TPPH_ARATH Probable trehalose-phosphate phosphatase H	76.000%	Swiss-Prot	High
`F4KFG5`	Arabidopsis thaliana	sp\|F4KFG5\|TPPI_ARATH Probable trehalose-phosphate phosphatase I	72.600%	Swiss-Prot	High
`Q67X99`	Arabidopsis thaliana	sp\|Q67X99\|TPPE_ARATH Probable trehalose-phosphate phosphatase E	73.700%	Swiss-Prot	High
`Q6ZAL2`	Oryza sativa subsp. japonica	sp\|Q6ZAL2\|TPP6_ORYSJ Probable trehalose-phosphate phosphatase 6	65.800%	Swiss-Prot	High

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