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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G159420
Reference: TK1151 Chr: Chr03 Coordinates: 40420183-40421793 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1611 bp · TkA03G159420|TK1151|cDNA

ATGCCGAGGATGATACGCACGTTAAAAAAGGTTCGAATGTCATATTCATGGAATAATTCCACTTGTGGGTTGTTCGGCAATGGAGGTTTTAGGGACTTAACAAGACCAGCTTTTGCAGCCATCAGATACTTTGTATCATGCACGTCAAAAGAAGATTCATACGAGTTGAACCGAATGTTAACACAATGTGAAGGCAGCATAAGATCTATTAAAAATATGCACGCTAAGATCATCATTGGAGGTTATGAGCAAAATGTTTT...

CDS

Download CDS FASTA

1611 bp · TkA03G159420|TK1151|CDS

ATGCCGAGGATGATACGCACGTTAAAAAAGGTTCGAATGTCATATTCATGGAATAATTCCACTTGTGGGTTGTTCGGCAATGGAGGTTTTAGGGACTTAACAAGACCAGCTTTTGCAGCCATCAGATACTTTGTATCATGCACGTCAAAAGAAGATTCATACGAGTTGAACCGAATGTTAACACAATGTGAAGGCAGCATAAGATCTATTAAAAATATGCACGCTAAGATCATCATTGGAGGTTATGAGCAAAATGTTTT...

Protein

Download Protein FASTA

536 aa · TkA03G159420|TK1151|PROTEIN

MPRMIRTLKKVRMSYSWNNSTCGLFGNGGFRDLTRPAFAAIRYFVSCTSKEDSYELNRMLTQCEGSIRSIKNMHAKIIIGGYEQNVFVGSKLIAIYSGLGQSYIEDARKLFDNLSERDVFLWNMMIQTYANSDLCPKALDMYNKMREQDLHLDKYTFTFVLKASGIKKDEKAGRIIHGHVMKCGFYLDLFVGNALIAFYAKCQMIEPCMKVFDEMPKRDLVSWNTAISSCATNDRITKALDLFRTLLHEQSLITPDHATL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G159420
TK1151 IDTkA03G159420
OH-1004 IDLXL04_007337
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G159420
LocationChr03:40420183-40421793 (-)
DescriptionSimilar to PCMP-H6: Pentatricopeptide repeat-containing protein At2g33760
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46790 Required for the intergenic processing between chloroplast rsp7 and ndhB transcripts. No verified direct reference in this release
At1g50270 Pentatricopeptide repeat-containing protein At1g50270. No verified direct reference in this release
At3g11460 Involved in C-to-U editing of mitochondrial RNA.
MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8.2013 · DOI: 10.1007/s11103-012-0003-2
At5g39350 Pentatricopeptide repeat-containing protein At5g39350. No verified direct reference in this release
At4g38010 Pentatricopeptide repeat-containing protein At4g38010. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_007337 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0031425 chloroplast RNA processing Biological Process
GO:0080156 mitochondrial mRNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT1G50270
ath:AT2G33760
ath:AT3G12770
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.712
Rank 1 · TkA03G159420 · TK1151
Plastid0.170
Rank 2 · TkA03G159420 · TK1151
Nucleus0.041
Rank 3 · TkA03G159420 · TK1151
Cytoplasm0.027
Rank 4 · TkA03G159420 · TK1151
Cell membrane0.006
Rank 5 · TkA03G159420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041PPR_292-118 aa
PF01535PPR104-118 aa
PF12854PPR_1104-112 aa
PF12854PPR_1116-146 aa
PF13041PPR_2117-163 aa
PF01535PPR121-148 aa
PF23276TPR_24123-213 aa
PF29070MSC6_N125-163 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G159420PF13041PPR_2921181.5e-35121.7
TkA03G159420PF01535PPR1041183.7e-38127.8
TkA03G159420PF12854PPR_11041128.9e-1761.3
TkA03G159420PF12854PPR_11161468.9e-1761.3
TkA03G159420PF13041PPR_21171631.5e-35121.7
TkA03G159420PF01535PPR1211483.7e-38127.8
TkA03G159420PF23276TPR_241232131.7e-1041.7
TkA03G159420PF29070MSC6_N1251630.002217.9
TkA03G159420PF17177PPR_long1301622.4e-0834.3
TkA03G159420PF13812PPR_31431723.3e-0834.2
TkA03G159420PF12854PPR_11501598.9e-1761.3
TkA03G159420PF20431E_motif1611686e-1143.1
TkA03G159420PF13812PPR_31832183.3e-0834.2
TkA03G159420PF01535PPR1932193.7e-38127.8
TkA03G159420PF13041PPR_21932191.5e-35121.7
TkA03G159420PF12854PPR_11932158.9e-1761.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9STF3Arabidopsis thalianasp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein CRR2, chloroplastic33.300%Swiss-ProtMedium
Q9SX45Arabidopsis thalianasp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g5027036.100%Swiss-ProtMedium
Q9CAY1Arabidopsis thalianasp|Q9CAY1|PP223_ARATH Putative pentatricopeptide repeat-containing protein At3g11460, mitochondrial34.100%Swiss-ProtMedium
Q9FLZ9Arabidopsis thalianasp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g3935032.500%Swiss-ProtMedium
Q9SZK1Arabidopsis thalianasp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g3801033.100%Swiss-ProtMedium

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