Gene Card
Gene overview
cDNA / CDS / Protein Sequences
342 bp · TkA03G157060|TK1151|cDNA
ATGCCGACCGCACCACCAGGACGACCTCACCAGTACAGAAAACGCACTTTCCATGAGGAAGATGAAGAATCGGACGACTTCCTATGGTGGAACAAAATGATCACCGGTTCTGGTCTTACAATCAGCAACAAATCAACAGAGTACAATAGAATCCTTTTCTGGGTTCACAAATACACCTCTCTCTCAATTTCAATTATAAGGGTGGGGCATGCGGGTACACTTGATCCTATGGCAACTGGTTTGCTTATTGTCTGTATCAG...
342 bp · TkA03G157060|TK1151|CDS
ATGCCGACCGCACCACCAGGACGACCTCACCAGTACAGAAAACGCACTTTCCATGAGGAAGATGAAGAATCGGACGACTTCCTATGGTGGAACAAAATGATCACCGGTTCTGGTCTTACAATCAGCAACAAATCAACAGAGTACAATAGAATCCTTTTCTGGGTTCACAAATACACCTCTCTCTCAATTTCAATTATAAGGGTGGGGCATGCGGGTACACTTGATCCTATGGCAACTGGTTTGCTTATTGTCTGTATCAG...
Protein
Download Protein FASTA113 aa · TkA03G157060|TK1151|PROTEIN
MPTAPPGRPHQYRKRTFHEEDEESDDFLWWNKMITGSGLTISNKSTEYNRILFWVHKYTSLSISIIRVGHAGTLDPMATGLLIVCISKATKLVDRFQGMVKGYSGVLQLEEAT
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA03G157060 |
|---|---|
| TK1151 ID | TkA03G157060 |
| OH-1004 ID | LXL04_007325 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA03G157060 |
|---|---|
| Location | Chr03:39822174-39823204 (+) |
| Description | Similar to truB: tRNA pseudouridine synthase B (Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / CIP 104284 / JCM 5825 / NCTC 11152) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006400 tRNA modification Biological Process GO:0031119 tRNA pseudouridine synthesis Biological Process GO:1990481 mRNA pseudouridine synthesis Biological Process GO:0003723 RNA binding Molecular Function GO:0009982 pseudouridine synthase activity Molecular Function GO:0160148 tRNA pseudouridine(55) synthase activity Molecular Function |
| KEGG gene cross-reference | bfr:BF0057 bfs:BF9343_0068 bth:BT_3213 bvu:BVU_1172 pdi:BDI_2406 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01509TruB_N65-113 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA03G157060 | PF01509 | TruB_N | 65 | 113 | 2.6e-15 | 57.8 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.