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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G130820
Reference: TK1151 Chr: Chr03 Coordinates: 33561897-33564292 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

747 bp · TkA03G130820|TK1151|cDNA

GTCAGCCACAGCCTCATAGCTTCACTCCCACCACTCAAACCAAACCCTCTGCAACTCCAAATCCCTCAATCAAAGTTCTCACCACCATCACATTTTGTCATTTTAATGGAGTCGCAAAAGCTTTAATCTCTATAGCTTCGCCTTTTCATTTTCATTTTCATTTTCATCAGATTTAATGTCGTCTTCATGTGCTACGCTACCGCATCGAGTAAGAACTGAGTGGCCTACCGCTAACAAATTCAGCTCCATCGTCAAAGCTC...

CDS

Download CDS FASTA

1107 bp · TkA03G130820|TK1151|CDS

ATGTCGTCTTCATGTGCTACGCTACCGCATCGAGTAAGAACTGAGTGGCCTACCGCTAACAAATTCAGCTCCATCGTCAAAGCTCAACCTTATAGAAATAGATGTGGTTTGAGTAGGAGAGATTTAGCCACGAAGGGAATTGTTGCAGCTGGTGCTTCGGTGATGCCATCTACTTTGCTATCTCAATCTGCTCAAGGTTTAGAACGACTACCTTTCAAAAACGATGGATATAGCTTTTGGACATGGAGAGGTCACAAAAT...

Protein

Download Protein FASTA

368 aa · TkA03G130820|TK1151|PROTEIN

MSSSCATLPHRVRTEWPTANKFSSIVKAQPYRNRCGLSRRDLATKGIVAAGASVMPSTLLSQSAQGLERLPFKNDGYSFWTWRGHKIHYVEEGEGFPIVLIHGFGASAFHWRYNIPELAKKYKVYAVDLLGFGWSEKALVDYDALVWRDQVADFLKEIVKEPTILVGNSLGGFTALVAAEAMKEQVVGLVLINSAGQFGNPNDETIEPEESSLQKYLIKPLKEVFQRVVLGFLFWQSKQPARVESVLKSVYKNPTNVDDY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G130820
TK1151 IDTkA03G130820
OH-1004 IDLXL04_038031
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)95.200
Protein coverage (%)TK1151 45.652 / OH-1004 91.803
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G130820
LocationChr03:33561897-33564292 (+)
DescriptionSimilar to dmpD: 2-hydroxymuconate semialdehyde hydrolase (Pseudomonas sp. (strain CF600)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g13800 Alpha/beta hydrolase dephytylating specifically the Mg-free chlorophyll pigment (pheophytin), yielding pheophorbide.
Reverse genetic identification of CRN1 and its distinctive role in chlorophyll degradation in Arabidopsis.2010 · DOI: 10.1111/j.1744-7909.2010.00945.x

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_038031 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009636 response to toxic substance Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0016311 dephosphorylation Biological Process
GO:0042632 cholesterol homeostasis Biological Process
GO:0043640 benzoate catabolic process via hydroxylation Biological Process
GO:0043651 linoleic acid metabolic process Biological Process
GO:0045777 positive regulation of blood pressure Biological Process
GO:0046272 stilbene catabolic process Biological Process
GO:0046464 acylglycerol catabolic process Biological Process
GO:0046839 phospholipid dephosphorylation Biological Process
GO:0090181 regulation of cholesterol metabolic process Biological Process
GO:0097176 epoxide metabolic process Biological Process
KEGG gene cross-reference
ag:CAA36993
mbo:BQ2027_MB2734
pau:PA14_26090
rno:65030
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.984
Rank 1 · TkA03G130820 · TK1151
Mitochondrion0.024
Rank 2 · TkA03G130820 · TK1151
Cytoplasm0.015
Rank 3 · TkA03G130820 · TK1151
Peroxisome0.013
Rank 4 · TkA03G130820 · TK1151
Nucleus0.013
Rank 5 · TkA03G130820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00561Abhydrolase_197-345 aa
PF00975Thioesterase97-189 aa
PF12697Abhydrolase_698-352 aa
PF12146Hydrolase_498-328 aa
PF02230Abhydrolase_298-114 aa
PF06821Ser_hydrolase99-196 aa
PF03959FSH199-123 aa
PF03096Ndr116-351 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G130820PF00561Abhydrolase_1973451.7e-2487.6
TkA03G130820PF00975Thioesterase971890.001719.3
TkA03G130820PF12697Abhydrolase_6983521.4e-2591.9
TkA03G130820PF12146Hydrolase_4983288.8e-1555.4
TkA03G130820PF02230Abhydrolase_2981140.1312.8
TkA03G130820PF06821Ser_hydrolase991960.003318.1
TkA03G130820PF03959FSH1991230.1412.6
TkA03G130820PF03096Ndr1163510.1111.9
TkA03G130820PF11187Mbeg1-like1322450.07113.2
TkA03G130820PF07859Abhydrolase_31422170.2112.0
TkA03G130820PF01764Lipase_31431860.2511.9
TkA03G130820PF10230LIDHydrolase1493430.0008819.8
TkA03G130820PF05728UPF02271502080.1113.0
TkA03G130820PF02230Abhydrolase_21561940.1312.8
TkA03G130820PF06342DUF10571591960.05813.2
TkA03G130820PF08386Abhydrolase_41601940.2512.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FFZ1Arabidopsis thalianasp|Q9FFZ1|PPH_ARATH Pheophytinase, chloroplastic26.400%Swiss-ProtLow

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