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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G128020
Reference: TK1151 Chr: Chr03 Coordinates: 32857662-32859472 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1107 bp · TkA03G128020|TK1151|cDNA

TTGAATTTTGCTTGCTTCCTGTCGAATTTTGCAAATGCATCGAATAGGCACAGCACTCTTCACCTATTTCATCTACATCTACTGTGAAATCTCAATACTGGTGTCTGAACTAAAAAGCAGATTTTCTGAAATGAAATTTTCCACTGGAATAATATCACAAGCTAGTGTTGAATCTACTGTTTTAGATATTTGGCCATGGAGAAATCGAGGGAAAATTAGATTCACGATTAGATTATGCTCCGCTAAGTGCTATGTACCAG...

CDS

Download CDS FASTA

558 bp · TkA03G128020|TK1151|CDS

ATGGGACTCCTCAGCATCATTCGGAAGATCAAACGGAAAGAAAAAGAAATGCGTATTCTTATGGTGGGACTTGACAATTCTGGGAAGACAACAATAGTGTTGAAAATCAATGGTGAAGATACCAGTGTTATCAGCCCTACTCTTGGCTTCAACATCAAAACCATGACCTATGATAAGTATACCTTAAACATATGGGATGTTGGAGGTCAAAAGACTATACGGTCTTACTGGAGAAACTACTTTGAGCAGACTGATGGATT...

Protein

Download Protein FASTA

185 aa · TkA03G128020|TK1151|PROTEIN

MGLLSIIRKIKRKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTMTYDKYTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKYELDNLLKEERLSGASLLVFANKQDIQGALSPNEIAKVLNLDAMDKTRHWRIVGCSAYTGEGLLEGFDWLVQDIASRIYVLD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G128020
TK1151 IDTkA03G128020
OH-1004 IDLXL04_002264
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G128020
LocationChr03:32857662-32859472 (-)
DescriptionSimilar to ARL2: ADP-ribosylation factor-like protein 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g18390 Has a role in the cofactor-dependent pathway of microtubule biogenesis.
The TITAN5 gene of Arabidopsis encodes a protein related to the ADP ribosylation factor family of GTP binding proteins.2000 · DOI: 10.1105/tpc.12.8.1379

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002264 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000226 microtubule cytoskeleton organization Biological Process
GO:0006110 regulation of glycolytic process Biological Process
GO:0006457 protein folding Biological Process
GO:0007021 tubulin complex assembly Biological Process
GO:0007098 centrosome cycle Biological Process
GO:0009558 embryo sac cellularization Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0009960 endosperm development Biological Process
GO:0010811 positive regulation of cell-substrate adhesion Biological Process
GO:0015870 acetylcholine transport Biological Process
GO:0031113 regulation of microtubule polymerization Biological Process
GO:0031116 positive regulation of microtubule polymerization Biological Process
KEGG gene cross-reference
ath:AT2G18390
bta:511349
hsa:402
mmu:56327
rno:65142
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.394
Rank 1 · TkA03G128020 · TK1151
Golgi apparatus0.338
Rank 2 · TkA03G128020 · TK1151
Lysosome / Vacuole0.192
Rank 3 · TkA03G128020 · TK1151
Endoplasmic reticulum0.152
Rank 4 · TkA03G128020 · TK1151
Cell membrane0.147
Rank 5 · TkA03G128020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf4-177 aa
PF00503G-alpha11-36 aa
PF015916PF2K12-37 aa
PF09439SRPRB16-143 aa
PF26860Phage_T5_RBP516-72 aa
PF08477Roc18-128 aa
PF00071Ras18-177 aa
PF04670Gtr1_RagA18-129 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G128020PF00025Arf41778.7e-70234.4
TkA03G128020PF00503G-alpha11361.1e-1145.2
TkA03G128020PF015916PF2K12370.2211.5
TkA03G128020PF09439SRPRB161431.1e-0835.4
TkA03G128020PF26860Phage_T5_RBP516720.01315.0
TkA03G128020PF08477Roc181281.2e-1145.6
TkA03G128020PF00071Ras181777.8e-1142.5
TkA03G128020PF04670Gtr1_RagA181293.2e-0834.0
TkA03G128020PF01926MMR_HSR1181256.3e-0627.0
TkA03G128020PF00009GTP_EFTU18365.9e-0523.5
TkA03G128020PF02421FeoB_N18980.008416.4
TkA03G128020PF00503G-alpha451281.1e-1145.2
TkA03G128020PF22155Mre11_acc_DNA_cap531140.01216.1
TkA03G128020PF00009GTP_EFTU541755.9e-0523.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZPX1Arabidopsis thalianasp|Q9ZPX1|ARF5_ARATH ADP-ribosylation factor-like protein 290.800%Swiss-ProtHigh

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