TkA03G125370 | RubberDandelionOmics

Gene overview

TkA03G125370

Reference: TK1151 Chr: Chr03 Coordinates: 32189027-32189818 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

324 bp · TkA03G125370|TK1151|cDNA

TATTGTTTCAGCTTTGTTTGTGATGCCTTGGATGGTTGGTTTGCCCGCAAGTTCGATCAACCATATTTCATACTTATTATCCTTAATCTGACATTTCTCAGGATAAGCACTGCATGTCTTCTGGTTATTCTCTCTCAAGTTTACAGGCCTAGCTTTGTTTTGTTGTCATTGCTTGCTTTGGATGTTGCAAGCCATTGGTTGCAGATGTACATTACTTTCTTGGTTGGTAAATCTAATCATAAAGATATGAAAGACAGCAC...

CDS

Download CDS FASTA

324 bp · TkA03G125370|TK1151|CDS

TATTGTTTCAGCTTTGTTTGTGATGCCTTGGATGGTTGGTTTGCCCGCAAGTTCGATCAACCATATTTCATACTTATTATCCTTAATCTGACATTTCTCAGGATAAGCACTGCATGTCTTCTGGTTATTCTCTCTCAAGTTTACAGGCCTAGCTTTGTTTTGTTGTCATTGCTTGCTTTGGATGTTGCAAGCCATTGGTTGCAGATGTACATTACTTTCTTGGTTGGTAAATCTAATCATAAAGATATGAAAGACAGCAC...

Protein

Download Protein FASTA

107 aa · TkA03G125370|TK1151|PROTEIN

YCFSFVCDALDGWFARKFDQPYFILIILNLTFLRISTACLLVILSQVYRPSFVLLSLLALDVASHWLQMYITFLVGKSNHKDMKDSTSWLFKLLWKQNVYGILLHSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G125370`
TK1151 ID	TkA03G125370
OH-1004 ID	LXL04_033538
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	74.700
Protein coverage (%)	TK1151 81.308 / OH-1004 56.863 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G125370

Location Chr03:32189027-32189818 (-)

Description Similar to PIS2: Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68000`	Catalyzes the biosynthesis of phosphatidylinositol (PtdIns) as well as PtdIns:inositol exchange reaction.	No verified direct reference in this release
`At4g38570`	Catalyzes the biosynthesis of phosphatidylinositol (PtdIns) as well as PtdIns:inositol exchange reaction.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_033538 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006661 phosphatidylinositol biosynthetic process Biological Process

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0046341 CDP-diacylglycerol metabolic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005741 mitochondrial outer membrane Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0003881 CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G68000

ath:AT4G38570

cal:CAALFM_C405210WA

hsa:10423

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.821

Rank 1 · TkA03G125370 · TK1151

Nucleus0.102

Rank 2 · TkA03G125370 · TK1151

Cytoplasm0.087

Rank 3 · TkA03G125370 · TK1151

Golgi apparatus0.073

Rank 4 · TkA03G125370 · TK1151

Cell membrane0.047

Rank 5 · TkA03G125370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01066CDP-OH_P_transf2-21 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G125370	`PF01066`	CDP-OH_P_transf	2	21	0.24	12.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LBA6`	Arabidopsis thaliana	sp\|Q8LBA6\|PIS1_ARATH CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1	65.000%	Swiss-Prot	High
`Q8GUK6`	Arabidopsis thaliana	sp\|Q8GUK6\|PIS2_ARATH Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2	65.000%	Swiss-Prot	High

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