TkA03G119800 | RubberDandelionOmics

Gene overview

TkA03G119800

Reference: TK1151 Chr: Chr03 Coordinates: 30600547-30602857 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1616 bp · TkA03G119800|TK1151|cDNA

AGCAGAGAAGCGTCTAAATCAATACTCCGATGGCGTCTGGTGATAGAAGAACCGCAGAAGAAAAAGCCATCGACGAATGGCTTCCAGTGACATCCTCCCGAAACGCAAAGTGGTGGTACTCAGCTTTCCACAATGTCACCGCCATGGTCGGCGCCGGCGTCCTCAGTCTCCCCTACGCTCTATCCCAACTCGGATGGGGATTCGGAATCACAGTACTCCTCCTCTCGTGGATAATCACCCTCTACACCCTCTGGCAAATG...

CDS

Download CDS FASTA

1311 bp · TkA03G119800|TK1151|CDS

ATGGCGTCTGGTGATAGAAGAACCGCAGAAGAAAAAGCCATCGACGAATGGCTTCCAGTGACATCCTCCCGAAACGCAAAGTGGTGGTACTCAGCTTTCCACAATGTCACCGCCATGGTCGGCGCCGGCGTCCTCAGTCTCCCCTACGCTCTATCCCAACTCGGATGGGGATTCGGAATCACAGTACTCCTCCTCTCGTGGATAATCACCCTCTACACCCTCTGGCAAATGGTGGAAATGCACGAAATGGTTCCAGGAAA...

Protein

Download Protein FASTA

436 aa · TkA03G119800|TK1151|PROTEIN

MASGDRRTAEEKAIDEWLPVTSSRNAKWWYSAFHNVTAMVGAGVLSLPYALSQLGWGFGITVLLLSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGTCIVYMVTGGKSLQKFQQSVCPDCKPLKTTYFILIFASVHFILAHLPNFNSISCVSLAAAIMSLSYSTIAWMASWNRGAHHGVDYSPRSKTPLGQMFGMFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWLGCVV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G119800`
TK1151 ID	TkA03G119800
OH-1004 ID	LXL04_025777
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.789 / OH-1004 27.818 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G119800

Location Chr03:30600547-30602857 (+)

Description Similar to LHT1: Lysine histidine transporter 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40780`	Amino acid-proton symporter.	Arabidopsis LHT1 is a high-affinity transporter for cellular amino acid uptake in both root epidermis and leaf mesophyll.2006 · DOI: 10.1105/tpc.106.041012 Comprehensive screening of Arabidopsis mutants suggests the lysine histidine transporter 1 to be involved in plant uptake of amino acids.2007 · DOI: 10.1104/pp.106.092205 Root uptake of cationic amino acids by Arabidopsis depends on functional expression of amino acid permease 5.2008 · DOI: 10.1111/j.1469-8137.2008.02589.x LHT1, a lysine- and histidine-specific amino acid transporter in arabidopsis.1997 · DOI: 10.1104/pp.115.3.1127
`At1g24400`	Amino acid-proton symporter.	Selective expression of a novel high-affinity transport system for acidic and neutral amino acids in the tapetum cells of Arabidopsis flowers.2004 · DOI: 10.1111/j.1365-313x.2004.02186.x
`At1g67640`	Amino acid transporter.	No verified direct reference in this release
`At1g48640`	Amino acid transporter.	No verified direct reference in this release
`At1g61270`	Amino acid transporter.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_025777 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0003333 amino acid transmembrane transport Biological Process

GO:0006952 defense response Biological Process

GO:0016556 mRNA modification Biological Process

GO:0043090 amino acid import Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009536 plastid Cellular Component

GO:0016020 membrane Cellular Component

GO:0003723 RNA binding Molecular Function

GO:0015171 amino acid transmembrane transporter activity Molecular Function

GO:0015172 acidic amino acid transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G24400

ath:AT1G33350

ath:AT1G48640

ath:AT1G67640

ath:AT5G40780

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.825

Rank 1 · TkA03G119800 · TK1151

Cytoplasm0.102

Rank 2 · TkA03G119800 · TK1151

Endoplasmic reticulum0.059

Rank 3 · TkA03G119800 · TK1151

Lysosome / Vacuole0.055

Rank 4 · TkA03G119800 · TK1151

Golgi apparatus0.033

Rank 5 · TkA03G119800 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01490Aa_trans25-420 aa

PF03222Trp_Tyr_perm30-183 aa

PF03222Trp_Tyr_perm348-366 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G119800	`PF01490`	Aa_trans	25	420	6.1e-106	355.2
TkA03G119800	`PF03222`	Trp_Tyr_perm	30	183	1.3e-07	31.9
TkA03G119800	`PF03222`	Trp_Tyr_perm	348	366	1.3e-07	31.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FKS8`	Arabidopsis thaliana	sp\|Q9FKS8\|LHT1_ARATH Lysine histidine transporter 1	73.800%	Swiss-Prot	High
`Q9LRB5`	Arabidopsis thaliana	sp\|Q9LRB5\|LHT2_ARATH Lysine histidine transporter 2	72.500%	Swiss-Prot	High
`Q9SR44`	Arabidopsis thaliana	sp\|Q9SR44\|LHTL2_ARATH Lysine histidine transporter-like 2	73.000%	Swiss-Prot	High
`Q9C733`	Arabidopsis thaliana	sp\|Q9C733\|LHTL1_ARATH Lysine histidine transporter-like 1	67.000%	Swiss-Prot	High
`O22719`	Arabidopsis thaliana	sp\|O22719\|LHTL3_ARATH Lysine histidine transporter-like 3	64.000%	Swiss-Prot	High

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