TkA03G104570 | RubberDandelionOmics

Gene overview

TkA03G104570

Reference: TK1151 Chr: Chr03 Coordinates: 26769354-26770226 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

831 bp · TkA03G104570|TK1151|cDNA

ATGATTGTCACCATTGTCTTCACCTCTAACTTATCTAACAACAATCAACAAAACCATCGGCAACAGCATCAGGAGGAAGAAGAAAAGCAAAATTCTCAGAACCACCACGACCGGCACACCGACCTGAATCAATCCCAAATCGCCAGATCCCCCTCTATCCTCCACCGTCTCAAGTCCTTCAACTTCTTACCCCACATATCCCAAGAAGAGTTTTCGCCGGAGAACCACCGACAGCAAGACCCTTTACAATTAGCAGCTAC...

CDS

Download CDS FASTA

831 bp · TkA03G104570|TK1151|CDS

ATGATTGTCACCATTGTCTTCACCTCTAACTTATCTAACAACAATCAACAAAACCATCGGCAACAGCATCAGGAGGAAGAAGAAAAGCAAAATTCTCAGAACCACCACGACCGGCACACCGACCTGAATCAATCCCAAATCGCCAGATCCCCCTCTATCCTCCACCGTCTCAAGTCCTTCAACTTCTTACCCCACATATCCCAAGAAGAGTTTTCGCCGGAGAACCACCGACAGCAAGACCCTTTACAATTAGCAGCTAC...

Protein

Download Protein FASTA

276 aa · TkA03G104570|TK1151|PROTEIN

MIVTIVFTSNLSNNNQQNHRQQHQEEEEKQNSQNHHDRHTDLNQSQIARSPSILHRLKSFNFLPHISQEEFSPENHRQQDPLQLAATQYVFNQPLEYQHFDYDFDPTGSVHTSAVTVSTAQFSAHNQTHDAPHVVWEHHQTLETEMNQMTRFNFDGTQEEHTDEFQSLDEVYSKLKSGHDRTKSESDLSSKPPAKMKKSASLKVGFAHIEEEETVEAQRPVTMRERKSAARVVAEDDVEVDSKADDFINRFKNDLKLQRI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G104570`
TK1151 ID	TkA03G104570
OH-1004 ID	LXL04_007029
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.100
Protein coverage (%)	TK1151 100.000 / OH-1004 90.062 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G104570

Location Chr03:26769354-26770226 (-)

Description Similar to A70: Pathogen-associated molecular patterns-induced protein A70

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g56980`	Pathogen-associated molecular patterns-induced protein A70.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_007029 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009611 response to wounding Biological Process

GO:0009617 response to bacterium Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0042742 defense response to bacterium Biological Process

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT5G56980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.492

Rank 1 · TkA03G104570 · TK1151

Nucleus0.330

Rank 2 · TkA03G104570 · TK1151

Cytoplasm0.302

Rank 3 · TkA03G104570 · TK1151

Endoplasmic reticulum0.079

Rank 4 · TkA03G104570 · TK1151

Golgi apparatus0.035

Rank 5 · TkA03G104570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF05553DUF761239-266 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G104570	`PF05553`	DUF761	239	266	2.9e-11	43.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4K956`	Arabidopsis thaliana	sp\|F4K956\|A70_ARATH Pathogen-associated molecular patterns-induced protein A70	48.000%	Swiss-Prot	Low

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