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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G091310
Reference: TK1151 Chr: Chr03 Coordinates: 23266008-23266319 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

312 bp · TkA03G091310|TK1151|cDNA

ATGCCTCATTGTTATTTTGATTCAAATTATCTGTTTTCACTCTATAGGTGTTGTGTTTGTTTGGGAGAATTCGAGATGAATGAGAAGTTACATCAAATACCATCATGCCAACACATGTTCCATGGTGATTGCATTCGAAACTGGCTCCATTCCAATTTCACATGTCCACTCTGTAGATGCTCAGTTATCGTCAGTGCCGCCAAAAACTGCCACCACGAGCCGCCAGTGGTTCCCGAACCAGCCACCATGACCAACATGAG...

CDS

Download CDS FASTA

312 bp · TkA03G091310|TK1151|CDS

ATGCCTCATTGTTATTTTGATTCAAATTATCTGTTTTCACTCTATAGGTGTTGTGTTTGTTTGGGAGAATTCGAGATGAATGAGAAGTTACATCAAATACCATCATGCCAACACATGTTCCATGGTGATTGCATTCGAAACTGGCTCCATTCCAATTTCACATGTCCACTCTGTAGATGCTCAGTTATCGTCAGTGCCGCCAAAAACTGCCACCACGAGCCGCCAGTGGTTCCCGAACCAGCCACCATGACCAACATGAG...

Protein

Download Protein FASTA

103 aa · TkA03G091310|TK1151|PROTEIN

MPHCYFDSNYLFSLYRCCVCLGEFEMNEKLHQIPSCQHMFHGDCIRNWLHSNFTCPLCRCSVIVSAAKNCHHEPPVVPEPATMTNMSSSSQGVPLGHSVIIFV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA03G091310
TK1151 IDTkA03G091310
OH-1004 IDLXL04_005738
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)94.200
Protein coverage (%)TK1151 83.495 / OH-1004 38.393
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G091310
LocationChr03:23266008-23266319 (-)
DescriptionSimilar to RHA4A: Probable E3 ubiquitin-protein ligase RHA4A
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g33480 RING-H2 finger protein ATL58. No verified direct reference in this release
At4g10150 RING-H2 finger protein ATL7. No verified direct reference in this release
At4g10160 E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8, UBC10, UBC11, and UBC34 in vitro. No verified direct reference in this release
At5g46650 RING-H2 finger protein ATL30. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005738 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT1G23980
ath:AT1G33480
ath:AT4G10150
ath:AT4G10160
ath:AT4G24015
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.527
Rank 1 · TkA03G091310 · TK1151
Nucleus0.506
Rank 2 · TkA03G091310 · TK1151
Cell membrane0.063
Rank 3 · TkA03G091310 · TK1151
Endoplasmic reticulum0.060
Rank 4 · TkA03G091310 · TK1151
Mitochondrion0.055
Rank 5 · TkA03G091310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF17120zf-RING_1615-60 aa
PF23413zf_RING_Vps8_fungal15-20 aa
PF13639zf-RING_216-59 aa
PF13923zf-C3HC4_216-58 aa
PF14634zf-RING_516-59 aa
PF11793FANCL_C16-54 aa
PF17123zf-RING_1117-45 aa
PF00097zf-C3HC417-58 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G091310PF17120zf-RING_1615600.01815.4
TkA03G091310PF23413zf_RING_Vps8_fungal15200.05213.6
TkA03G091310PF13639zf-RING_216591.5e-1248.3
TkA03G091310PF13923zf-C3HC4_216588.4e-0729.4
TkA03G091310PF14634zf-RING_516590.0116.5
TkA03G091310PF11793FANCL_C16542.99.0
TkA03G091310PF17123zf-RING_1117452.6e-0730.9
TkA03G091310PF00097zf-C3HC417585.6e-0523.6
TkA03G091310PF13445zf-RING_UBOX17569.8e-0523.0
TkA03G091310PF12678zf-rbx126594.4e-0730.8
TkA03G091310PF12861zf-ANAPC1135630.0002821.6
TkA03G091310PF23413zf_RING_Vps8_fungal35590.05213.6
TkA03G091310PF17123zf-RING_1165652.6e-0730.9
TkA03G091310PF13923zf-C3HC4_267728.4e-0729.4
TkA03G091310PF00097zf-C3HC467735.6e-0523.6
TkA03G091310PF12678zf-rbx168724.4e-0730.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q570X5Arabidopsis thalianasp|Q570X5|ATL58_ARATH RING-H2 finger protein ATL5838.600%Swiss-ProtMedium
Q9SN28Arabidopsis thalianasp|Q9SN28|ATL7_ARATH RING-H2 finger protein ATL741.100%Swiss-ProtMedium
Q9SN27Arabidopsis thalianasp|Q9SN27|ATL59_ARATH E3 ubiquitin-protein ligase ATL5950.000%Swiss-ProtMedium
Q9FIR0Arabidopsis thalianasp|Q9FIR0|ATL30_ARATH RING-H2 finger protein ATL3044.400%Swiss-ProtMedium

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