TkA03G088840 | RubberDandelionOmics

Gene overview

TkA03G088840

Reference: TK1151 Chr: Chr03 Coordinates: 22588025-22598711 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1527 bp · TkA03G088840|TK1151|cDNA

TAGAAACTCTAGATCACCCCTACATTTCACTATGGAAGAACACGATCTTCCCAAATGACAACAAAACTTTGAAATCTAAAAGTCATCCATCATACGAACACATAAAGATATCATCAGAAATTTACAGAAATTCATCTATCCTGATCTTCTTTTTCTCCAATTAATCTTTATATCTATATAGGCATTTGATTCACAAAACGGGTTTTCGTTCGAATCAATGAATAACACCAATCTTGTAATCATCTGGATTTTAATCGTGA...

CDS

Download CDS FASTA

1260 bp · TkA03G088840|TK1151|CDS

ATGAATAACACCAATCTTGTAATCATCTGGATTTTAATCGTGACCACTATCGTACCCATCATTGCCGATAAACCAACCACTAGACCAACGAATGTAGGCGTGGCGAACTATTGTACCATCCTTAGCATCGATGGTGGTGGTGTTCGCGGCCTCATTCCCGGCACTATCCTTGCATTTCTTGAATCCAAACTTCAGGAAATAGATGGACCAAATGCACGGATTGCGGATTATTTTGATGTAGTTGCTGGAACAAGCACCGG...

Protein

Download Protein FASTA

419 aa · TkA03G088840|TK1151|PROTEIN

MNNTNLVIIWILIVTTIVPIIADKPTTRPTNVGVANYCTILSIDGGGVRGLIPGTILAFLESKLQEIDGPNARIADYFDVVAGTSTGGLMTTMLTAPDYRNRPLYAARDLNGFYFQHSPKIFPQLSRIKFLNSVAGMFGEVSGPKYDGKYIRSLTKVLLRNMTIKQTLTDVVIPAFDIKRLQPIIFTTAQAKEVAWKDAQLADVCISTAAAPTYFPPYYFETTDVDGTKHTFDLIDGGVAANNPTQLALTHISKEVLMGK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G088840`
TK1151 ID	TkA03G088840
OH-1004 ID	LXL04_006914
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	68.500
Protein coverage (%)	TK1151 69.690 / OH-1004 97.010 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G088840

Location Chr03:22588025-22598711 (+)

Description Similar to PLP1: Patatin-like protein 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g37050`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`UniProt: A2YW91`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	No verified direct reference in this release
`Os08g0477500`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	No verified direct reference in this release
`UniProt: B8AQW7`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	No verified direct reference in this release
`Os03g0393900`	Possesses non-specific lipolytic acyl hydrolase (LAH) activity.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_006914 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0004620 glycerophospholipase activity Molecular Function

GO:0047372 monoacylglycerol lipase activity Molecular Function

KEGG gene cross-reference

ath:AT4G37050

dosa:Os03g0393900

dosa:Os08g0477500

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.326

Rank 1 · TkA03G088840 · TK1151

Cell membrane0.257

Rank 2 · TkA03G088840 · TK1151

Lysosome / Vacuole0.171

Rank 3 · TkA03G088840 · TK1151

Cytoplasm0.149

Rank 4 · TkA03G088840 · TK1151

Endoplasmic reticulum0.104

Rank 5 · TkA03G088840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01734Patatin41-249 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G088840	`PF01734`	Patatin	41	249	1.3e-23	85.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O23181`	Arabidopsis thaliana	sp\|O23181\|PLP3_ARATH Patatin-like protein 3	50.900%	Swiss-Prot	High
`A2YW91`	Oryza sativa subsp. indica	sp\|A2YW91\|PLP2_ORYSI Patatin-like protein 2	52.700%	Swiss-Prot	High
`Q6ZJD3`	Oryza sativa subsp. japonica	sp\|Q6ZJD3\|PLP2_ORYSJ Patatin-like protein 2	52.700%	Swiss-Prot	High
`B8AQW7`	Oryza sativa subsp. indica	sp\|B8AQW7\|PLP1_ORYSI Patatin-like protein 1	49.000%	Swiss-Prot	Medium
`Q84QY3`	Oryza sativa subsp. japonica	sp\|Q84QY3\|PLP1_ORYSJ Patatin-like protein 1	48.700%	Swiss-Prot	Medium

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