TkA03G085910 | RubberDandelionOmics

Gene overview

TkA03G085910

Reference: TK1151 Chr: Chr03 Coordinates: 21890142-21895847 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2140 bp · TkA03G085910|TK1151|cDNA

AGTTAATGGTCAACGGATATTATCTAGCAGGACAATAACAACCAACCAAAACAACCATACGAAATCATCCCTGACTGCCGCAAGTAGCTCTGTTTTGGATGCAAGTGATAATCTGAAGAATCAAAGAAGCTACCAAGATCATGTTACCTGCACCTATCAAGAATACAAATTCCTCATCCTCTTCCGTACTGCCAGACCAGAGATGTCAACATTTTACTGTCGCTGAGATTGTATCGGCAACAAACAACTTCGACAAGAGT...

CDS

Download CDS FASTA

1980 bp · TkA03G085910|TK1151|CDS

ATGTTACCTGCACCTATCAAGAATACAAATTCCTCATCCTCTTCCGTACTGCCAGACCAGAGATGTCAACATTTTACTGTCGCTGAGATTGTATCGGCAACAAACAACTTCGACAAGAGTTTAGTAATCGGCCGTGGAGGATTCGGGAAGGTGTATAAAGGCCGCATCAAGATTGGGTCAGTAAGCGAAGTTGTAATTAAACGATTGCGTTCCAACTCCAATCAAGGAGCCCATGAATTTGAAGCTGAAGTTCAGGTTCT...

Protein

Download Protein FASTA

659 aa · TkA03G085910|TK1151|PROTEIN

MLPAPIKNTNSSSSSVLPDQRCQHFTVAEIVSATNNFDKSLVIGRGGFGKVYKGRIKIGSVSEVVIKRLRSNSNQGAHEFEAEVQVLSKLRHGNLVSLIGFCKKGNKMALVYEFMPNGTLEEKLHKPDSFLSLLQRLKICIGAARGLDYLHTGTSTQHGVIHRDVKSSNILLDANFDAKIADFGLARFGLIDRTHVSTAVKGTFGYMDPCYFYTGKLTTSSDVYAFGVVLFEVLTGKKAVDSTLDEEQWGLAPWAQHQIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G085910`
TK1151 ID	TkA03G085910
OH-1004 ID	LXL04_006886
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.500
Protein coverage (%)	TK1151 99.848 / OH-1004 57.568 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G085910

Location Chr03:21890142-21895847 (+)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At5g24010`	Probable receptor-like protein kinase At5g24010.	No verified direct reference in this release
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006886 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

GO:0032922 circadian regulation of gene expression Biological Process

KEGG gene cross-reference

ath:AT3G51550

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.647

Rank 1 · TkA03G085910 · TK1151

Cytoplasm0.271

Rank 2 · TkA03G085910 · TK1151

Nucleus0.209

Rank 3 · TkA03G085910 · TK1151

Endoplasmic reticulum0.043

Rank 4 · TkA03G085910 · TK1151

Golgi apparatus0.031

Rank 5 · TkA03G085910 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF16518GrlR37-57 aa

PF00069Pkinase41-306 aa

PF07714PK_Tyr_Ser-Thr42-307 aa

PF03109ABC143-72 aa

PF03109ABC1156-187 aa

PF01636APH156-190 aa

PF16518GrlR187-218 aa

PF07714PK_Tyr_Ser-Thr413-647 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G085910	`PF16518`	GrlR	37	57	0.24	12.3
TkA03G085910	`PF00069`	Pkinase	41	306	1e-54	186.4
TkA03G085910	`PF07714`	PK_Tyr_Ser-Thr	42	307	2e-63	214.8
TkA03G085910	`PF03109`	ABC1	43	72	0.028	14.3
TkA03G085910	`PF03109`	ABC1	156	187	0.028	14.3
TkA03G085910	`PF01636`	APH	156	190	0.26	11.7
TkA03G085910	`PF16518`	GrlR	187	218	0.24	12.3
TkA03G085910	`PF07714`	PK_Tyr_Ser-Thr	413	647	2e-63	214.8
TkA03G085910	`PF00069`	Pkinase	414	645	1e-54	186.4
TkA03G085910	`PF16518`	GrlR	459	515	0.24	12.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCZ4`	Arabidopsis thaliana	sp\|Q9SCZ4\|FERON_ARATH Receptor-like protein kinase FERONIA	52.300%	Swiss-Prot	Low
`Q9FID8`	Arabidopsis thaliana	sp\|Q9FID8\|Y5900_ARATH Putative receptor-like protein kinase At5g39000	48.400%	Swiss-Prot	Low
`Q9FID9`	Arabidopsis thaliana	sp\|Q9FID9\|Y5389_ARATH Probable receptor-like protein kinase At5g38990	48.900%	Swiss-Prot	Low
`Q9FLW0`	Arabidopsis thaliana	sp\|Q9FLW0\|Y5241_ARATH Probable receptor-like protein kinase At5g24010	52.000%	Swiss-Prot	Low
`Q3E8W4`	Arabidopsis thaliana	sp\|Q3E8W4\|ANX2_ARATH Receptor-like protein kinase ANXUR2	49.800%	Swiss-Prot	Low

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