TkA03G079180 | RubberDandelionOmics

Gene overview

TkA03G079180

Reference: TK1151 Chr: Chr03 Coordinates: 20178566-20181950 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1473 bp · TkA03G079180|TK1151|cDNA

CTTATTTGTTGATAAAATTGCGCAGGAATATCCACTCGTGTTGTATCGATATGATCACCGGGCAGACCAGCCCATACGTATCACCAGGCGTCGCGTCACACCTCTTCGCCTCTACCAACCCTCGAAGACATTCGCCATATCTGTTCCGGCGACGGTGAATCGTCGCGAATCAGCTCCACCGGAGGCCGGCCAAATAACTACGTGTCTTGATACCTTGCTTTACGAAGGAAGGAACAAATGGCGTACTCCTCTTCTACTCA...

CDS

Download CDS FASTA

1005 bp · TkA03G079180|TK1151|CDS

ATGGCGTACTCCTCTTCTACTCAATTGATATCACACTGCTATCCATATATAGACATAATGGGGAAATGTTCTAAAAATTATGGTATTCAACAATGCCTTATGTCTGATAAAAGAAAAAAATTGTGTCTATCTAAACGGATTTTTTATCGCAATGATATGTTTTCTTGCAAAACAAGTCACCATAATTTGTATAAAATTGAGAGATGTGTGATAGTTAGATCGGGAATTGCTGGAACTGGATCCCCTTCAACTGCATATCA...

Protein

Download Protein FASTA

334 aa · TkA03G079180|TK1151|PROTEIN

MAYSSSTQLISHCYPYIDIMGKCSKNYGIQQCLMSDKRKKLCLSKRIFYRNDMFSCKTSHHNLYKIERCVIVRSGIAGTGSPSTAYHLPEFQVISKVRGVCFYAVTSTIAIFLIMSMIIAHPFVLLKDQYQRTFHHFIAKIWASMTLYPFMKLKIQGLENLPPKNSPAVYVSNHQSFLDIYALLTLGRNLKFISKTAIFLFPVVGWAMFLMGVIPLKRMDSRSQLQTLKRCMELVKNGGSVFFFPEGTRSKDGRLGTFKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G079180`
TK1151 ID	TkA03G079180
OH-1004 ID	LXL04_016217
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	31.200
Protein coverage (%)	TK1151 40.719 / OH-1004 28.364 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G079180

Location Chr03:20178566-20181950 (+)

Description Similar to TAZ: Tafazzin

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30580`	Plastidial enzyme of the prokaryotic glycerol-3-phosphate pathway that converts lysophosphatidic acid (LPA) into phosphatidic acid by incorporating an acyl moiety at position sn-2.	Plastid lysophosphatidyl acyltransferase is essential for embryo development in Arabidopsis.2004 · DOI: 10.1104/pp.103.035832

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_016217 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007007 inner mitochondrial membrane organization Biological Process

GO:0032048 cardiolipin metabolic process Biological Process

GO:0035965 cardiolipin acyl-chain remodeling Biological Process

GO:0042407 cristae formation Biological Process

GO:0045823 positive regulation of heart contraction Biological Process

GO:0046471 phosphatidylglycerol metabolic process Biological Process

GO:1900210 positive regulation of cardiolipin metabolic process Biological Process

GO:2001171 positive regulation of ATP biosynthetic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005741 mitochondrial outer membrane Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0005758 mitochondrial intermembrane space Cellular Component

KEGG gene cross-reference

dre:321965

ggo:101147380

mmu:66826

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.959

Rank 1 · TkA03G079180 · TK1151

Mitochondrion0.033

Rank 2 · TkA03G079180 · TK1151

Nucleus0.016

Rank 3 · TkA03G079180 · TK1151

Endoplasmic reticulum0.015

Rank 4 · TkA03G079180 · TK1151

Cytoplasm0.014

Rank 5 · TkA03G079180 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06697DUF119165-107 aa

PF01553Acyltransferase153-278 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G079180	`PF06697`	DUF1191	65	107	0.16	12.4
TkA03G079180	`PF01553`	Acyltransferase	153	278	3.6e-33	114.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8GXU8`	Arabidopsis thaliana	sp\|Q8GXU8\|LPAT1_ARATH 1-acyl-sn-glycerol-3-phosphate acyltransferase LPAT1, chloroplastic	61.500%	Swiss-Prot	High

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