TkA03G066170 | RubberDandelionOmics

Gene overview

TkA03G066170

Reference: TK1151 Chr: Chr03 Coordinates: 17030143-17030740 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

453 bp · TkA03G066170|TK1151|cDNA

AGATACTCTTCCAGATTCCGTTCCTGATTTCAACAAGATGAAGCTTTCACTAGCAGCTATACTAATCCTCGCTTTCGTTCTCACCTTCTCCGTCTTCGAATCCGCCACCGCCACTGCTCCTACCGGCGGCATATCAGCTTCCGTCTCCATTTCCGTCTACGCTCCAAGTGGATTTGGATGCAATAAGAAGTGTGAATTGAGGTGTTCGAGATCTGGACGGAGAGATAGATGCTTGGATTATTGCGGGATCTGCTGCGGGA...

CDS

Download CDS FASTA

327 bp · TkA03G066170|TK1151|CDS

ATGAAGCTTTCACTAGCAGCTATACTAATCCTCGCTTTCGTTCTCACCTTCTCCGTCTTCGAATCCGCCACCGCCACTGCTCCTACCGGCGGCATATCAGCTTCCGTCTCCATTTCCGTCTACGCTCCAAGTGGATTTGGATGCAATAAGAAGTGTGAATTGAGGTGTTCGAGATCTGGACGGAGAGATAGATGCTTGGATTATTGCGGGATCTGCTGCGGGAAATGCAGCGGCTGTGTTCCGGCAGGTCCGTACGCCGA...

Protein

Download Protein FASTA

108 aa · TkA03G066170|TK1151|PROTEIN

MKLSLAAILILAFVLTFSVFESATATAPTGGISASVSISVYAPSGFGCNKKCELRCSRSGRRDRCLDYCGICCGKCSGCVPAGPYADKAQCPCYRDMIKDILCGIIVE

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G066170`
TK1151 ID	TkA03G066170
OH-1004 ID	LXL04_006738
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 40.741 / OH-1004 11.028 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G066170

Location Chr03:17030143-17030740 (+)

Description Similar to IMK2: Probably inactive leucine-rich repeat receptor-like protein kinase IMK2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g59845`	Gibberellin-regulated protein that may function in hormonal controlled steps of development such as seed germination, flowering and seed maturation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006738 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009740 gibberellic acid mediated signaling pathway Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT3G51740

ath:AT5G59845

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.827

Rank 1 · TkA03G066170 · TK1151

Endoplasmic reticulum0.064

Rank 2 · TkA03G066170 · TK1151

Cytoplasm0.052

Rank 3 · TkA03G066170 · TK1151

Lysosome / Vacuole0.033

Rank 4 · TkA03G066170 · TK1151

Cell membrane0.029

Rank 5 · TkA03G066170 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02704GASA48-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G066170	`PF02704`	GASA	48	99	2.8e-15	56.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LFM2`	Arabidopsis thaliana	sp\|Q8LFM2\|GASAA_ARATH Gibberellin-regulated protein 10	50.000%	Swiss-Prot	Low

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