TkA03G063690 | RubberDandelionOmics

Gene overview

TkA03G063690

Reference: TK1151 Chr: Chr03 Coordinates: 16416432-16419400 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2275 bp · TkA03G063690|TK1151|cDNA

TCCTCCATTTTGGCCAAATGTTAATTTCTAGCATGTGTATTTTACTTAAAGATGTTGATTGTTTGACATAGTACATAATCAATAAATCAAAACATTTAATGCTAAAGAAACAACTCTTGAGTACTTCACTTCTGCTACTTTTGTAAAACCAAGTGAAATATATATGTACTTTCGTGTAAAGTTTTTATCTTTTTGCTATATATATTGAAGTATACATAACATGATTCTTGTTATGATTAATCAATCATTGTTCTAATGGA...

CDS

Download CDS FASTA

1683 bp · TkA03G063690|TK1151|CDS

ATGAAGAAAACTAGTGACTGGATTTTCTCCCAAGAGATCCCAAGTGATGTTACAATCCACACAGGAGGTGCTTCTTTTTCATTACACAAGTTTCCATTGGTTTCAAAGTGTGGTTACATAAGAAAACTAGTATCCAATTACCCCAAAGATTCTGATGTTTTGGAAATTGAAATCCCTGATGTCCCTGGAGGCCCTGAAGGATTTGAACTTGCAGCAAAGTTTTGTTATGGAATTGACTTCGAATTATCAACAGAAAACAT...

Protein

Download Protein FASTA

560 aa · TkA03G063690|TK1151|PROTEIN

MKKTSDWIFSQEIPSDVTIHTGGASFSLHKFPLVSKCGYIRKLVSNYPKDSDVLEIEIPDVPGGPEGFELAAKFCYGIDFELSTENISMVRCVSEFLEMTEDYSVGNLVTRSEAYLNEVGLKTLGGAVTILQSSENFLQMAEKVKLINRCIDTIAYMVMKESEFCSSNLNGIVDWWAEDLVVLRIDIFQRVLLAMISSGFKQYALGPILMLYAQKCLRGLEIFGKRKKKIDPKQEHEKRIVLETIVSLLPRERSAMSVSF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G063690`
TK1151 ID	TkA03G063690
OH-1004 ID	LXL04_036778
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	44.300
Protein coverage (%)	TK1151 86.964 / OH-1004 86.424 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G063690

Location Chr03:16416432-16419400 (-)

Description Similar to At5g48800: BTB/POZ domain-containing protein At5g48800

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g67385`	Acts as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (Probable).	No verified direct reference in this release
`At3g49970`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`At5g48800`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release
`UniProt: Q682S0`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity).	No verified direct reference in this release
`At1g03010`	May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036778 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009846 pollen germination Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0016567 protein ubiquitination Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G03010

ath:AT2G47860

ath:AT3G08570

ath:AT3G08660

ath:AT5G48800

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.434

Rank 1 · TkA03G063690 · TK1151

Cytoplasm0.432

Rank 2 · TkA03G063690 · TK1151

Cell membrane0.173

Rank 3 · TkA03G063690 · TK1151

Endoplasmic reticulum0.051

Rank 4 · TkA03G063690 · TK1151

Golgi apparatus0.035

Rank 5 · TkA03G063690 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03000NPH3174-416 aa

PF09764Nt_Gln_amidase307-393 aa

PF26528SnoaL_6394-475 aa

PF28454CCDC17_middle_coil409-425 aa

PF27935CCDC61_coil428-496 aa

PF28454CCDC17_middle_coil434-485 aa

PF06156YabA455-497 aa

PF14916CCDC92457-479 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G063690	`PF03000`	NPH3	174	416	6.6e-84	282.3
TkA03G063690	`PF09764`	Nt_Gln_amidase	307	393	0.00045	20.6
TkA03G063690	`PF26528`	SnoaL_6	394	475	0.16	12.6
TkA03G063690	`PF28454`	CCDC17_middle_coil	409	425	0.06	14.3
TkA03G063690	`PF27935`	CCDC61_coil	428	496	0.021	16.1
TkA03G063690	`PF28454`	CCDC17_middle_coil	434	485	0.06	14.3
TkA03G063690	`PF06156`	YabA	455	497	0.12	13.7
TkA03G063690	`PF14916`	CCDC92	457	479	0.058	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q66GP0`	Arabidopsis thaliana	sp\|Q66GP0\|SR1P1_ARATH BTB/POZ domain-containing protein SR1IP1	62.700%	Swiss-Prot	High
`Q9SN21`	Arabidopsis thaliana	sp\|Q9SN21\|Y3997_ARATH Putative BTB/POZ domain-containing protein At3g49970	57.200%	Swiss-Prot	High
`Q9FKB6`	Arabidopsis thaliana	sp\|Q9FKB6\|Y5880_ARATH BTB/POZ domain-containing protein At5g48800	42.200%	Swiss-Prot	Medium
`Q682S0`	Arabidopsis thaliana	sp\|Q682S0\|RPT2_ARATH Root phototropism protein 2	39.600%	Swiss-Prot	Medium
`Q9SA69`	Arabidopsis thaliana	sp\|Q9SA69\|Y1301_ARATH BTB/POZ domain-containing protein At1g03010	37.400%	Swiss-Prot	Medium

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