TkA03G045070 | RubberDandelionOmics

Gene overview

TkA03G045070

Reference: TK1151 Chr: Chr03 Coordinates: 11881363-11882671 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1202 bp · TkA03G045070|TK1151|cDNA

TAAAACTCTCGCTTTTTCTCTTCTTTTTCCATCCGTCTCTTTCTCTCGTTGCTTCGCCGGCGTTTATAGTTTTCATTATTTCCCGGCGAAGATTTGGTTTTTCAATTAGGTTCTTTTTTTTTTCAAATTAGTGGAATAAATCCATTGATGTTTAGATAATAACTATGGCGAGTACTCGAGATTCAAGCTATTCAAGGGATTTGTTGCAGAGATTTACATGCGGCGGAGGAGGGAATCGTAATCCGGTGAAACCAAAAGAG...

CDS

Download CDS FASTA

939 bp · TkA03G045070|TK1151|CDS

ATGGCGAGTACTCGAGATTCAAGCTATTCAAGGGATTTGTTGCAGAGATTTACATGCGGCGGAGGAGGGAATCGTAATCCGGTGAAACCAAAAGAGGAAGCTCATGGACCACCGGGAAACGTAGAGCTGAGTTTAGGGTTGTCGTTAAACGGTAATTTTGGGGTGGAACCAGAAAGAACGGCGGTTAATGACGGGAATATCGATAGAAAGCTATTTCGTGCTACTTCGGTGAACGATTTCGTGAAGTTTTCGGTGGATGT...

Protein

Download Protein FASTA

312 aa · TkA03G045070|TK1151|PROTEIN

MASTRDSSYSRDLLQRFTCGGGGNRNPVKPKEEAHGPPGNVELSLGLSLNGNFGVEPERTAVNDGNIDRKLFRATSVNDFVKFSVDVELSLYSPLTRTCSLPVETEAEWRKKKELQSLRRSEAKRKRVEKLKNVRVVKTKTVEDWDRNRSNSVKDGQLSEVGLKQSPPSSSTPSSPSPALQFTSQGSIGSQGSGGSSGVSDLDSQPFQGTNTKSQSQGRSESNKVDRTPKSNPRDGAWPDVQSMPCVSTKVEGSDGKKIQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G045070`
TK1151 ID	TkA03G045070
OH-1004 ID	LXL04_006522
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G045070

Location Chr03:11881363-11882671 (+)

Description Similar to AFP2: Ninja-family protein AFP2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g29575`	Acts as a negative regulator of abscisic acid (ABA) response and stress responses.	No verified direct reference in this release
`At1g13740`	Acts as a negative regulator of abscisic acid (ABA) response during germination through the ubiquitin-mediated proteolysis of ABI5/DPBF1.	A small plant-specific protein family of ABI five binding proteins (AFPs) regulates stress response in germinating Arabidopsis seeds and seedlings.2008 · DOI: 10.1007/s11103-008-9344-2

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0419100`	Acts as a repressor of the jasmonate antiviral pathway toward rice stripe virus (RSV) via the negative regulation of AGO18.	Perception of viral infections and initiation of antiviral defence in rice.2025 · DOI: 10.1038/s41586-025-08706-8

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006522 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G13740

ath:AT1G69260

ath:AT3G29575

zma:100283969

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.970

Rank 1 · TkA03G045070 · TK1151

Cytoplasm0.096

Rank 2 · TkA03G045070 · TK1151

Cell membrane0.031

Rank 3 · TkA03G045070 · TK1151

Endoplasmic reticulum0.019

Rank 4 · TkA03G045070 · TK1151

Plastid0.012

Rank 5 · TkA03G045070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07897EAR41-76 aa

PF07897EAR85-91 aa

PF16136NLS_NINJA_AFP95-131 aa

PF15768CC190110-236 aa

PF07897EAR113-123 aa

PF07897EAR167-174 aa

PF07897EAR209-222 aa

PF16135TDBD273-305 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G045070	`PF07897`	EAR	41	76	8.6e-08	32.4
TkA03G045070	`PF07897`	EAR	85	91	8.6e-08	32.4
TkA03G045070	`PF16136`	NLS_NINJA_AFP	95	131	8.1e-17	61.4
TkA03G045070	`PF15768`	CC190	110	236	0.069	13.9
TkA03G045070	`PF07897`	EAR	113	123	8.6e-08	32.4
TkA03G045070	`PF07897`	EAR	167	174	8.6e-08	32.4
TkA03G045070	`PF07897`	EAR	209	222	8.6e-08	32.4
TkA03G045070	`PF16135`	TDBD	273	305	9e-08	32.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94F39`	Arabidopsis thaliana	sp\|Q94F39\|AFP3_ARATH Ninja-family protein AFP3	45.800%	Swiss-Prot	Medium
`Q9LMX5`	Arabidopsis thaliana	sp\|Q9LMX5\|AFP2_ARATH Ninja-family protein AFP2	40.800%	Swiss-Prot	Medium
`Q10JI3`	Oryza sativa subsp. japonica	sp\|Q10JI3\|NNJA3_ORYSJ Ninja-family protein 3	37.100%	Swiss-Prot	Medium

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