TkA03G037090 | RubberDandelionOmics

Gene overview

TkA03G037090

Reference: TK1151 Chr: Chr03 Coordinates: 9795009-9798913 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1055 bp · TkA03G037090|TK1151|cDNA

AACTGATTTGGTAGACAGTTACAGACCTACTAAAACGAATTTACCGAAATGGCAGTATCATACAAGAAACGTTGAAGATGATAGATATGAAATCCTGAACTTGCTTAAAGCAAAAAAGATCACATTATTCTATGCATGAAAGGAGACAAAAAACTACACAAAACTCGGAGCAAAGCTACCACAAGGTGTATTACTAACGGGCCCACCAGGAACAGGGAAAACTTTATTAGCCCGAGCTGTTGCCGGAGAAGCTGACGTGG...

CDS

Download CDS FASTA

1065 bp · TkA03G037090|TK1151|CDS

ATGACTATGGCAAACCTCCTCACGAGTACTCCATCGATGATCCTCGCCCCACAACGGCTCAGTTCTCGACCTAAAGCTAAAAGATCTTACTACACATCACCAACCTCCTCCTTTACGCTTCCACTGATACATGCTGTTAAACTTAAACAATCATCTGCACTTGTTAAGAGAAATTCAGGTTTTGGCGGCAATATTAGTACGAGTGAAAGCTTTCGTTCCAATTCAATTTTGTTGTTTAACGATTTGAATCAGTTCAAATG...

Protein

Download Protein FASTA

354 aa · TkA03G037090|TK1151|PROTEIN

MTMANLLTSTPSMILAPQRLSSRPKAKRSYYTSPTSSFTLPLIHAVKLKQSSALVKRNSGFGGNISTSESFRSNSILLFNDLNQFKCHATKTDPVVDPAKVKQSKRPNNDRSPRRFGNSLYAIVIGTTVFVFLGICTLKVPNLIPPSSHQMKNVPYSDLIGGIQDGSVIRVQFDENSRQIYFNTKTPLQDQNLENPQTDLVDSYRPTKTNLPKWQYHTRNVEDDRYEILNLLKAKKITYGSNRALMSQSLKNFLFVFFQV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G037090`
TK1151 ID	TkA03G037090
OH-1004 ID	LXL04_006436
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	95.600
Protein coverage (%)	TK1151 95.480 / OH-1004 59.612 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G037090

Location Chr03:9795009-9798913 (-)

Description Similar to FTSHI3: Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g02450`	Might be involved in chaperone functions or play a structural role in the thylakoid FtsH complex.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006436 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006508 proteolysis Biological Process

GO:0030163 protein catabolic process Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0004176 ATP-dependent peptidase activity Molecular Function

GO:0004222 metalloendopeptidase activity Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ana:all4776

ath:AT3G02450

scl:sce7292

sun:SUN_1953

syn:slr1390

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.853

Rank 1 · TkA03G037090 · TK1151

Mitochondrion0.104

Rank 2 · TkA03G037090 · TK1151

Nucleus0.054

Rank 3 · TkA03G037090 · TK1151

Cytoplasm0.028

Rank 4 · TkA03G037090 · TK1151

Cell membrane0.016

Rank 5 · TkA03G037090 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06480FtsH_ext123-241 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G037090	`PF06480`	FtsH_ext	123	241	5.1e-05	24.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M895`	Arabidopsis thaliana	sp\|Q9M895\|FTSI3_ARATH Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, chloroplastic	62.200%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card