TkA03G035110 | RubberDandelionOmics

Gene overview

TkA03G035110

Reference: TK1151 Chr: Chr03 Coordinates: 9266706-9267062 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

357 bp · TkA03G035110|TK1151|cDNA

AAAAAAAAGAAAGATCACCATAGCAAGATCCACACAGCTCAAGGTCCGAGAGATCGGAGAGTGAGATTATCCATCGACGTCGCAAGAAAGTTCTTTTTTCTTCAAGATTTGCTAGGGTTTGATAAAGCAAGCAAGACACTCGATTGGCTGTTCAACAAGTCCAAGATCCCGATTGATGAGTTAATTCAAGAAAAGAAACAAAGCTCATCTCCTTCGGTCACCGATGAATCTGAAGTACTTTTTCTCACAAGGAATCAGAT...

CDS

Download CDS FASTA

357 bp · TkA03G035110|TK1151|CDS

AAAAAAAAGAAAGATCACCATAGCAAGATCCACACAGCTCAAGGTCCGAGAGATCGGAGAGTGAGATTATCCATCGACGTCGCAAGAAAGTTCTTTTTTCTTCAAGATTTGCTAGGGTTTGATAAAGCAAGCAAGACACTCGATTGGCTGTTCAACAAGTCCAAGATCCCGATTGATGAGTTAATTCAAGAAAAGAAACAAAGCTCATCTCCTTCGGTCACCGATGAATCTGAAGTACTTTTTCTCACAAGGAATCAGAT...

Protein

Download Protein FASTA

118 aa · TkA03G035110|TK1151|PROTEIN

KKKKDHHSKIHTAQGPRDRRVRLSIDVARKFFFLQDLLGFDKASKTLDWLFNKSKIPIDELIQEKKQSSSPSVTDESEVLFLTRNQMKKIKGRKRSRHRSVRTEKEKTYHENTNLKFL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G035110`
TK1151 ID	TkA03G035110
OH-1004 ID	LXL04_006413
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 69.492 / OH-1004 31.783 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G035110

Location Chr03:9266706-9267062 (+)

Description Similar to TB1: Transcription factor TB1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g68800`	Transcription factor that prevents axillary bud outgrowth.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006413 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009799 specification of symmetry Biological Process

GO:0009908 flower development Biological Process

GO:0048262 determination of dorsal/ventral asymmetry Biological Process

GO:0048831 regulation of shoot system development Biological Process

GO:2000032 regulation of secondary shoot formation Biological Process

GO:0005634 nucleus Cellular Component

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0043565 sequence-specific DNA binding Molecular Function

KEGG gene cross-reference

dosa:Os03g0706500

osa:4333856

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.896

Rank 1 · TkA03G035110 · TK1151

Cytoplasm0.172

Rank 2 · TkA03G035110 · TK1151

Mitochondrion0.033

Rank 3 · TkA03G035110 · TK1151

Cell membrane0.017

Rank 4 · TkA03G035110 · TK1151

Endoplasmic reticulum0.009

Rank 5 · TkA03G035110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03634TCP2-107 aa

PF15343DEPP26-101 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G035110	`PF03634`	TCP	2	107	8.7e-34	118.0
TkA03G035110	`PF15343`	DEPP	26	101	0.053	14.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`A0AQW4`	Arabidopsis thaliana	sp\|A0AQW4\|TCP12_ARATH Transcription factor TCP12	73.300%	Swiss-Prot	Medium

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