TkA03G026070 | RubberDandelionOmics

Gene overview

TkA03G026070

Reference: TK1151 Chr: Chr03 Coordinates: 6976958-6977864 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

603 bp · TkA03G026070|TK1151|cDNA

ATGACACACCACACCATGGAACCGTCTTTTGCTCCAAGTAGTATTCTTGATAAAATGACGAAGAGTGCAGAAAAACCAAATGGTAAAGATGAAGTCGACGGTGGTTCACGGCGGAGGTTCGTCGTTAAAGGCCATTGGAAGCCGTCGGAGGACGTTAAGTTACGAGAACTCGTCGCTCTTCATGGGCCGAAAAACTGGAATATGATATCGGAACAACTTCCAGGAAGAACCGGGAAGAGTTGCAGGCTCCGATGGGTGAA...

CDS

Download CDS FASTA

603 bp · TkA03G026070|TK1151|CDS

ATGACACACCACACCATGGAACCGTCTTTTGCTCCAAGTAGTATTCTTGATAAAATGACGAAGAGTGCAGAAAAACCAAATGGTAAAGATGAAGTCGACGGTGGTTCACGGCGGAGGTTCGTCGTTAAAGGCCATTGGAAGCCGTCGGAGGACGTTAAGTTACGAGAACTCGTCGCTCTTCATGGGCCGAAAAACTGGAATATGATATCGGAACAACTTCCAGGAAGAACCGGGAAGAGTTGCAGGCTCCGATGGGTGAA...

Protein

Download Protein FASTA

200 aa · TkA03G026070|TK1151|PROTEIN

MTHHTMEPSFAPSSILDKMTKSAEKPNGKDEVDGGSRRRFVVKGHWKPSEDVKLRELVALHGPKNWNMISEQLPGRTGKSCRLRWVNQLDPQISTAVFSREEDETLMAAHMVFGNQWSHIAKFFPGRTDNGIKNHWHVLTARRRKHVAGVSNSCSSGSFHRLSGDSGNGSSGSTITLLGKSTLINEGTSLLCMHTPDSGN

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G026070`
TK1151 ID	TkA03G026070
OH-1004 ID	LXL04_006300
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.500 / OH-1004 75.097 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G026070

Location Chr03:6976958-6977864 (+)

Description Similar to CSA: Transcription factor CSA

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g69560`	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning.	LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis.2009 · DOI: 10.1242/dev.031971
`At1g26780`	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning.	LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis.2009 · DOI: 10.1242/dev.031971 Characterization of constricted fruit (ctf) mutant uncovers a role for AtMYB117/LOF1 in ovule and fruit development in Arabidopsis thaliana.2011 · DOI: 10.1371/journal.pone.0018760
`At1g17950`	Transcription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought.	A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325 Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.2013 · DOI: 10.3389/fpls.2013.00189
`At1g73410`	Transcription factor that regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers.	A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis.2008 · DOI: 10.1105/tpc.108.061325

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0274800`	Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006300 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001935 endothelial cell proliferation Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009834 plant-type secondary cell wall biogenesis Biological Process

GO:0010199 organ boundary specification between lateral organs and the meristem Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process

GO:0051782 negative regulation of cell division Biological Process

GO:0071367 cellular response to brassinosteroid stimulus Biological Process

KEGG gene cross-reference

ath:AT1G17950

ath:AT1G26780

ath:AT1G69560

ath:AT5G17800

dosa:Os01g0274800

osa:4325181

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.954

Rank 1 · TkA03G026070 · TK1151

Cytoplasm0.116

Rank 2 · TkA03G026070 · TK1151

Cell membrane0.019

Rank 3 · TkA03G026070 · TK1151

Mitochondrion0.013

Rank 4 · TkA03G026070 · TK1151

Plastid0.008

Rank 5 · TkA03G026070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00249Myb_DNA-binding43-89 aa

PF15963Myb_DNA-bind_745-85 aa

PF13921Myb_DNA-bind_646-106 aa

PF08914Myb_Rap159-93 aa

PF20222DUF658165-87 aa

PF00249Myb_DNA-binding98-137 aa

PF13921Myb_DNA-bind_698-145 aa

PF15963Myb_DNA-bind_798-138 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G026070	`PF00249`	Myb_DNA-binding	43	89	4.5e-33	113.8
TkA03G026070	`PF15963`	Myb_DNA-bind_7	45	85	0.00057	20.3
TkA03G026070	`PF13921`	Myb_DNA-bind_6	46	106	1.3e-25	90.1
TkA03G026070	`PF08914`	Myb_Rap1	59	93	0.022	15.9
TkA03G026070	`PF20222`	DUF6581	65	87	0.0076	15.9
TkA03G026070	`PF00249`	Myb_DNA-binding	98	137	4.5e-33	113.8
TkA03G026070	`PF13921`	Myb_DNA-bind_6	98	145	1.3e-25	90.1
TkA03G026070	`PF15963`	Myb_DNA-bind_7	98	138	0.00057	20.3
TkA03G026070	`PF08914`	Myb_Rap1	98	108	0.022	15.9
TkA03G026070	`PF20222`	DUF6581	116	152	0.0076	15.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SEZ4`	Arabidopsis thaliana	sp\|Q9SEZ4\|MY105_ARATH Transcription factor MYB105	60.900%	Swiss-Prot	Medium
`Q9LQX5`	Arabidopsis thaliana	sp\|Q9LQX5\|MY117_ARATH Transcription factor MYB117	56.200%	Swiss-Prot	Medium
`Q6R0C4`	Arabidopsis thaliana	sp\|Q6R0C4\|MYB52_ARATH Transcription factor MYB52	64.400%	Swiss-Prot	Medium
`Q9FX36`	Arabidopsis thaliana	sp\|Q9FX36\|MYB54_ARATH Transcription factor MYB54	60.400%	Swiss-Prot	Medium
`Q5NBM8`	Oryza sativa subsp. japonica	sp\|Q5NBM8\|CSA_ORYSJ Transcription factor CSA	59.000%	Swiss-Prot	Medium

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