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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G024820
Reference: TK1151 Chr: Chr03 Coordinates: 6391975-6393857 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

966 bp · TkA03G024820|TK1151|cDNA

CCGACAACCAGCTCGCCACAGGCGGACACCCGCCACACGCCGTCGTGTGTCATCCTCCATAACCAATATCCCCTTCATACTCAGACACACGATTCAACTCTCGCTACTTCATCTTGTCCTCAACCCCATCTTCAATTTACAGAGGTACAAACTTCTTCCCATCTACTAAGTAATACACCAAAGATCATACACTTTCCCCCAATTTCAAGAGAAAGTTCGCTGCTTCTGTTGAATTTGCATAAACTGAGGGCATTACGTCA...

CDS

Download CDS FASTA

546 bp · TkA03G024820|TK1151|CDS

ATGGATGAAAATGTCGATACGACAAAGAAGAAATCGATTGCTAGATCTTCATTGAGCAAGAAGCATAATGCAAAGGTTCACAGGAAGATTCACAAAGCAGAAAGAGAGAAGCTGAAACGTGACCATATGAACGACTTATTTCTAGAGCTCACGAAAGCCGTAGAACCAAGTACTCAAAATAGTGGAAAGTCTTCTGCATTGACCGATACTATTCGAATAATTCGTGACCTAATAGCTCAAGTTGAGTCTCTCAAGAAGGA...

Protein

Download Protein FASTA

181 aa · TkA03G024820|TK1151|PROTEIN

MDENVDTTKKKSIARSSLSKKHNAKVHRKIHKAEREKLKRDHMNDLFLELTKAVEPSTQNSGKSSALTDTIRIIRDLIAQVESLKKDNSVLLAESQYVAIERNELKEENSAMEAQIIKLRSQIEQGARPVVGPVFVVPVQNDPKLYTEPKIGSNVSKPHARYPLPSDSWPFNILSEQAKTD

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G024820
TK1151 IDTkA03G024820
OH-1004 IDLXL04_006276
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 90.050
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G024820
LocationChr03:6391975-6393857 (-)
DescriptionSimilar to IRO3: Protein IRON-RELATED TRANSCRIPTION FACTOR 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g47640 Transcription factor bHLH47. No verified direct reference in this release
At3g23210 Transcription factor bHLH34. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os07g0628500 Transcription factor that plays a positive role in salt stress tolerance.
OsJAZ9 acts as a transcriptional regulator in jasmonate signaling and modulates salt stress tolerance in rice.2015 · DOI: 10.1016/j.plantsci.2014.12.010
Os03g0379300 Transcription factor that acts as a negative regulator of the iron deficiency response.
Identification of a novel iron regulated basic helix-loop-helix protein involved in Fe homeostasis in Oryza sativa.2010 · DOI: 10.1186/1471-2229-10-166
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006276 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006879 intracellular iron ion homeostasis Biological Process
GO:0010039 response to iron ion Biological Process
GO:0010106 cellular response to iron ion starvation Biological Process
GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0000976 transcription cis-regulatory region binding Molecular Function
GO:0003677 DNA binding Molecular Function
GO:0003700 DNA-binding transcription factor activity Molecular Function
GO:0046983 protein dimerization activity Molecular Function
KEGG gene cross-reference
ath:AT3G19860
ath:AT3G47640
ath:AT4G36060
dosa:Os03g0379300
dosa:Os07g0628500
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.962
Rank 1 · TkA03G024820 · TK1151
Cytoplasm0.140
Rank 2 · TkA03G024820 · TK1151
Cell membrane0.018
Rank 3 · TkA03G024820 · TK1151
Endoplasmic reticulum0.010
Rank 4 · TkA03G024820 · TK1151
Plastid0.007
Rank 5 · TkA03G024820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06334Orthopox_A473-62 aa
PF08961NRBF27-112 aa
PF25966Myo5a9-86 aa
PF16471JIP_LZII20-36 aa
PF28907ZapB_rel20-36 aa
PF14282FlxA21-32 aa
PF00010HLH28-77 aa
PF23177bHLH_IRO330-114 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G024820PF06334Orthopox_A473620.00716.4
TkA03G024820PF08961NRBF271120.06413.5
TkA03G024820PF25966Myo5a9860.5910.9
TkA03G024820PF16471JIP_LZII20360.0514.5
TkA03G024820PF28907ZapB_rel20360.1113.9
TkA03G024820PF14282FlxA21326.07.9
TkA03G024820PF00010HLH28772.5e-0524.7
TkA03G024820PF23177bHLH_IRO3301142.8e-2279.6
TkA03G024820PF16516CC2-LZ301250.1613.1
TkA03G024820PF06005ZapB31420.01716.3
TkA03G024820PF06156YabA32347.47.9
TkA03G024820PF02183HALZ33400.07813.9
TkA03G024820PF19443DAHL461160.02115.2
TkA03G024820PF05837CENP-H501240.04314.4
TkA03G024820PF14282FlxA591256.07.9
TkA03G024820PF06005ZapB651240.01716.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SN74Arabidopsis thalianasp|Q9SN74|BH047_ARATH Transcription factor bHLH4749.300%Swiss-ProtLow
Q9LTC7Arabidopsis thalianasp|Q9LTC7|BH034_ARATH Transcription factor bHLH3437.000%Swiss-ProtLow
Q69V10Oryza sativa subsp. japonicasp|Q69V10|BH062_ORYSJ Transcription factor BHLH06251.900%Swiss-ProtMedium
Q10KL8Oryza sativa subsp. japonicasp|Q10KL8|IRO3_ORYSJ Protein IRON-RELATED TRANSCRIPTION FACTOR 359.500%Swiss-ProtLow

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