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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G008860
Reference: TK1151 Chr: Chr03 Coordinates: 2163117-2167361 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1767 bp · TkA03G008860|TK1151|cDNA

ACAGCCCCGAACATTTTCAAGAGGGGGCTTGAAGAAGAGTTCTCTTAACTTCGCTCTTTACCAAAACCTCGGAAGAACCCTCGTCAGTCGTCACCTCTCTCACTCTCAATCTGAGTTCTCCTCCGGTTTTCAAATCCATGAAGTTCCTCCGTTCTATCTCCGCGAATCGCCAGCCATTGCTTGCAGCTCTCGGCCGTCGTCAATTTGCCGTCTCCGCCGACGATTACGCCAAGAGAAACTACGCCAACAATGTCTCTGAA...

CDS

Download CDS FASTA

1344 bp · TkA03G008860|TK1151|CDS

ATGAAGTTCCTCCGTTCTATCTCCGCGAATCGCCAGCCATTGCTTGCAGCTCTCGGCCGTCGTCAATTTGCCGTCTCCGCCGACGATTACGCCAAGAGAAACTACGCCAACAATGTCTCTGAATACAATACAGTCATTGGATCTCTCACTTCTCAAAGAAGGATTTACTTGTTGAGAGATGTATACGATGATATGATGCTGGATGGAGTTAAACCAGAGAAAGACACATTTCGCGCGCTGATTGCTGGTAGCATGAAAGG...

Protein

Download Protein FASTA

447 aa · TkA03G008860|TK1151|PROTEIN

MKFLRSISANRQPLLAALGRRQFAVSADDYAKRNYANNVSEYNTVIGSLTSQRRIYLLRDVYDDMMLDGVKPEKDTFRALIAGSMKGVRLQDCFYFRDQMKSMGLIPDVVLYNFMISTCGKCKNSTEATRIFEEMKKLEVKPTGQTFICLINACAATGRLDQVYAIIRDMTAAGLGLNKFCYAGLIAAHKNKTPLPKDTSTKILELVEQSKGWSSLEQTRDSAENVMMGISEEELYDIPTANYIHRRGGFVQRFLTVYHV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G008860
TK1151 IDTkA03G008860
OH-1004 IDLXL04_006087
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G008860
LocationChr03:2163117-2167361 (-)
DescriptionSimilar to At4g35850: Pentatricopeptide repeat-containing protein At4g35850, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g35850 Pentatricopeptide repeat-containing protein At4g35850, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006087 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009409 response to cold Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0010239 chloroplast mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005783 endoplasmic reticulum Cellular Component
GO:0005840 ribosome Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009534 chloroplast thylakoid Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0042644 chloroplast nucleoid Cellular Component
GO:1990904 ribonucleoprotein complex Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT2G37230
ath:AT3G53700
ath:AT4G35850
ath:AT5G25630
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.937
Rank 1 · TkA03G008860 · TK1151
Nucleus0.040
Rank 2 · TkA03G008860 · TK1151
Cytoplasm0.036
Rank 3 · TkA03G008860 · TK1151
Plastid0.022
Rank 4 · TkA03G008860 · TK1151
Cell membrane0.014
Rank 5 · TkA03G008860 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N21-167 aa
PF13812PPR_329-81 aa
PF23276TPR_2434-134 aa
PF13041PPR_238-83 aa
PF12854PPR_138-49 aa
PF01535PPR42-70 aa
PF08579RPM253-83 aa
PF17177PPR_long55-171 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G008860PF29070MSC6_N211673.4e-1143.6
TkA03G008860PF13812PPR_329814.6e-1969.0
TkA03G008860PF23276TPR_24341340.002318.6
TkA03G008860PF13041PPR_238833e-2588.8
TkA03G008860PF12854PPR_138492.5e-0731.0
TkA03G008860PF01535PPR42706.3e-1348.7
TkA03G008860PF08579RPM253830.09913.8
TkA03G008860PF17177PPR_long551711.9e-0938.0
TkA03G008860PF13812PPR_3611214.6e-1969.0
TkA03G008860PF12854PPR_168832.5e-0731.0
TkA03G008860PF13041PPR_2761103e-2588.8
TkA03G008860PF01535PPR761056.3e-1348.7
TkA03G008860PF13812PPR_3981544.6e-1969.0
TkA03G008860PF12854PPR_11031362.5e-0731.0
TkA03G008860PF13041PPR_21071553e-2588.8
TkA03G008860PF01535PPR1101386.3e-1348.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8VYR5Arabidopsis thalianasp|Q8VYR5|PP351_ARATH Pentatricopeptide repeat-containing protein At4g35850, mitochondrial56.100%Swiss-ProtHigh

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