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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G008310
Reference: TK1151 Chr: Chr03 Coordinates: 2027594-2036523 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1479 bp · TkA03G008310|TK1151|cDNA

AAGAAAGGCCCATTGAGTTCTGTTGAACAGTTGACGGGAATAACCGGAACTATTAAAAAACGTCACAGATACTTCACGTTCCATCCTCCGGCGGCCATCTCCGTCTCCCCGGTACTCCTTTCGTTCTCGTCGTTCGTCTTCTTCTCCGCCGACCCAGTTAATCGGCTCCGGCACACATCCTGGGTTCATGAATGTTGAAAAGAGTTTAGCATGTACGCTAGACGGAGCTTAAGCACGGTTGTCGGAGACTGTCCACGGCT...

CDS

Download CDS FASTA

777 bp · TkA03G008310|TK1151|CDS

ATGGACGAAGGAATCAAGGAGAAGTTCTTTTCAGATTTGAGTCGCTTTTATCATCAGAAACCGGAGGTCGATGCTCTGATTCACGGTTTCGAAAATGTAGGCCTGAAATCCTACCAATCCGATACTGCTTCGGACAATGTCCAGGATCCGAGACCCGATGGCGATCACAGCACCGGCAATCGTAACATGCATCACCCGATTCGAATCGGGGCTGAAGACTGCTCGTTTTTTGTTCGAACTGGGACGTGCAAGTTTGGGCG...

Protein

Download Protein FASTA

258 aa · TkA03G008310|TK1151|PROTEIN

MDEGIKEKFFSDLSRFYHQKPEVDALIHGFENVGLKSYQSDTASDNVQDPRPDGDHSTGNRNMHHPIRIGAEDCSFFVRTGTCKFGRTCKFNHPVSNIAHVDQGKSNENGAESSSKSLSRIPCKFYPTGFCKNGDSCRFSHSIFPQHNVLGLPKRWGQRFCSFYMRTGVCGYGTSCRFHHPQPFFFLLESNQEQEQEEQEINGQDFSEKSTTSHVRTLQFGSLPYGFDVYQKKNGHSLIDGSTSESPSGGTLSLVIHT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G008310
TK1151 IDTkA03G008310
OH-1004 IDLXL04_006078
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)96.800
Protein coverage (%)TK1151 96.899 / OH-1004 98.814
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G008310
LocationChr03:2027594-2036523 (+)
DescriptionSimilar to At3g48440: Zinc finger CCCH domain-containing protein 43
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g48440 Zinc finger CCCH domain-containing protein 43. No verified direct reference in this release
At5g63260 Zinc finger CCCH domain-containing protein 67. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0616400 Zinc finger CCCH domain-containing protein 8. No verified direct reference in this release
Os11g0472000 Zinc finger CCCH domain-containing protein 63. No verified direct reference in this release
Os12g0405100 Zinc finger CCCH domain-containing protein 66. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_006078 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005634 nucleus Cellular Component
GO:0003677 DNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT3G48440
ath:AT5G63260
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.750
Rank 1 · TkA03G008310 · TK1151
Cytoplasm0.286
Rank 2 · TkA03G008310 · TK1151
Cell membrane0.040
Rank 3 · TkA03G008310 · TK1151
Endoplasmic reticulum0.028
Rank 4 · TkA03G008310 · TK1151
Mitochondrion0.021
Rank 5 · TkA03G008310 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF22623zf-CCCH_956-60 aa
PF15663zf-CCCH_371-97 aa
PF00642zf-CCCH72-94 aa
PF25585zf-CCCH_DUS3L72-93 aa
PF14608zf-CCCH_273-94 aa
PF16131Torus73-99 aa
PF18345zf_CCCH_474-93 aa
PF18044zf-CCCH_474-94 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G008310PF22623zf-CCCH_956600.0008219.8
TkA03G008310PF15663zf-CCCH_371970.01316.4
TkA03G008310PF00642zf-CCCH72941.4e-2382.9
TkA03G008310PF25585zf-CCCH_DUS3L72932.3e-1247.3
TkA03G008310PF14608zf-CCCH_273945e-1040.2
TkA03G008310PF16131Torus73992.5e-0835.2
TkA03G008310PF18345zf_CCCH_474931.9e-1350.7
TkA03G008310PF18044zf-CCCH_474944.6e-1142.9
TkA03G008310PF25261zf-CCCH_PARP1274963e-0628.0
TkA03G008310PF22623zf-CCCH_974930.0008219.8
TkA03G008310PF29102Su_sable_N74930.003818.3
TkA03G008310PF25584zf-CCCH_RBM2274980.0813.7
TkA03G008310PF25586zf-CCCH_PAN381950.1112.9
TkA03G008310PF23261zf-CCCH_1182930.1712.1
TkA03G008310PF16131Torus1071452.5e-0835.2
TkA03G008310PF29102Su_sable_N1201420.003818.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9STM4Arabidopsis thalianasp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 4368.800%Swiss-ProtLow
Q5RJC5Arabidopsis thalianasp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 6741.100%Swiss-ProtLow
Q5ZDJ6Oryza sativa subsp. japonicasp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 835.400%Swiss-ProtLow
Q2R4J4Oryza sativa subsp. japonicasp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 6364.500%Swiss-ProtLow
Q2QT65Oryza sativa subsp. japonicasp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 6651.200%Swiss-ProtLow

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