TkA03G005140 | RubberDandelionOmics

Gene overview

TkA03G005140

Reference: TK1151 Chr: Chr03 Coordinates: 1237797-1238724 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

531 bp · TkA03G005140|TK1151|cDNA

CGACTCTTTAAAATTTTATGATATGCTGAAGTGAGATGCTATTTAACCAAAATAACATGATTTTGAATGCTATTTGATGCATAGTGCTAAGATTATTGCGACAATGTTCATATAGGTTGTGACAAAGAAAAAGATACGAGCATGGCAAGAAGCGAACCATCGTCATGGACCAAAGAGGTGCTACCGTTTGCTGCTATGTTGATGATAATATGCTTGGATATGGGCCTGCTAACAATAGTAAAAGCCGCGATGAATGGTGG...

CDS

Download CDS FASTA

390 bp · TkA03G005140|TK1151|CDS

ATGGCAAGAAGCGAACCATCGTCATGGACCAAAGAGGTGCTACCGTTTGCTGCTATGTTGATGATAATATGCTTGGATATGGGCCTGCTAACAATAGTAAAAGCCGCGATGAATGGTGGTATGAACAGTTTTGTTTATATCGTTTACCATAATGCTCTTGGAACATTGATTCTTCTCCCATTTTTCAGCATCCATATCTTCAGATTGGTTGGGCGTCCTCCACTCACCTTCCATGTACTTTTCAGATTTTTCATCCTTGG...

Protein

Download Protein FASTA

130 aa · TkA03G005140|TK1151|PROTEIN

MARSEPSSWTKEVLPFAAMLMIICLDMGLLTIVKAAMNGGMNSFVYIVYHNALGTLILLPFFSIHIFRLVGRPPLTFHVLFRFFILGLLGICLFQVLLYIGIGYSSPTMESAISNLIPGYTFLIAVAFRY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G005140`
TK1151 ID	TkA03G005140
OH-1004 ID	LXL04_024010
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	80.300
Protein coverage (%)	TK1151 97.692 / OH-1004 32.732 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G005140

Location Chr03:1237797-1238724 (+)

Description Similar to At3g28050: WAT1-related protein At3g28050

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g28050`	WAT1-related protein At3g28050.	No verified direct reference in this release
`At5g40210`	WAT1-related protein At5g40210.	No verified direct reference in this release
`At1g60050`	WAT1-related protein At1g60050.	No verified direct reference in this release
`At1g70260`	WAT1-related protein At1g70260.	No verified direct reference in this release
`At3g28100`	WAT1-related protein At3g28100.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024010 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G28050

ath:AT3G28100

ath:AT5G40210

ath:AT5G40230

ath:AT5G40240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.398

Rank 1 · TkA03G005140 · TK1151

Endoplasmic reticulum0.231

Rank 2 · TkA03G005140 · TK1151

Cell membrane0.205

Rank 3 · TkA03G005140 · TK1151

Golgi apparatus0.092

Rank 4 · TkA03G005140 · TK1151

Cytoplasm0.073

Rank 5 · TkA03G005140 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892EamA19-128 aa

PF14880COX1420-39 aa

PF14880COX1479-94 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G005140	`PF00892`	EamA	19	128	3.4e-07	31.3
TkA03G005140	`PF14880`	COX14	20	39	7.1	7.2
TkA03G005140	`PF14880`	COX14	79	94	7.1	7.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q94JU2`	Arabidopsis thaliana	sp\|Q94JU2\|WTR18_ARATH WAT1-related protein At3g28050	46.200%	Swiss-Prot	Medium
`Q945L4`	Arabidopsis thaliana	sp\|Q945L4\|WTR40_ARATH WAT1-related protein At5g40210	50.000%	Swiss-Prot	High
`Q9ZUI8`	Arabidopsis thaliana	sp\|Q9ZUI8\|WTR9_ARATH WAT1-related protein At1g60050	39.000%	Swiss-Prot	Medium
`F4I5D5`	Arabidopsis thaliana	sp\|F4I5D5\|WTR11_ARATH WAT1-related protein At1g70260	37.100%	Swiss-Prot	Medium
`Q9LRS5`	Arabidopsis thaliana	sp\|Q9LRS5\|WTR22_ARATH WAT1-related protein At3g28100	40.500%	Swiss-Prot	Medium

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