TkA03G004820 | RubberDandelionOmics

Gene overview

TkA03G004820

Reference: TK1151 Chr: Chr03 Coordinates: 1132369-1135158 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1480 bp · TkA03G004820|TK1151|cDNA

GATAATACAAGTTGGCATGAAAACAATGCTTCTAAATCCGCACGATTTGCAATTCTTTAATATTTTTATCAGAAAACTAGGTGACAAAATTGAACCCAGCGGATTTGAGATAACAGTTGACCAAATAAACTCATGATCTGGAATACCATTTTATGCATTTACATCTACCACGATATGAAGCCAACACTCGGATACATTTGAGATATGACAACTACAAGAAACAAGATGTGGTCATGGACCGAAGAGGTGCTGCCCTTTGT...

CDS

Download CDS FASTA

1089 bp · TkA03G004820|TK1151|CDS

ATGACAACTACAAGAAACAAGATGTGGTCATGGACCGAAGAGGTGCTGCCCTTTGTTGCTATGTTGACCATAACATGTTTGGATATGAGTGTGCTCACAATAGTGAAAGCGGCCATGAATGATGGTATGAACAGTTTCGTGTATATTGTTTACCATAACGCCCTTGGAACATTGGTTCTTTTTCCCTTTTTCATCTTCCATATCTTCAGAAATGTTGGGCGTCCTCCGCTCACTTTCCATATTCTTTTCAGATTCTTCAT...

Protein

Download Protein FASTA

362 aa · TkA03G004820|TK1151|PROTEIN

MTTTRNKMWSWTEEVLPFVAMLTITCLDMSVLTIVKAAMNDGMNSFVYIVYHNALGTLVLFPFFIFHIFRNVGRPPLTFHILFRFFILGLLGLCLFQVLVYIGIGYSSPTMASAIANLTPGNTFLIAVAFRMEKIDIRNTSSRAKLFGTIIAISGAMVFTFYKGPEILNTINSQNHLLMSQASDWVFGGLILVIGGLVGSIWNVLQSSTSREYPDQVTVIFYYCLFGTIQCIFISLFLVKNPSDWVLQPGIAMVAVVFGA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G004820`
TK1151 ID	TkA03G004820
OH-1004 ID	LXL04_024010
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	64.700
Protein coverage (%)	TK1151 98.066 / OH-1004 99.227 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G004820

Location Chr03:1132369-1135158 (+)

Description Similar to At3g28050: WAT1-related protein At3g28050

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g40240`	WAT1-related protein At5g40240.	No verified direct reference in this release
`At3g28050`	WAT1-related protein At3g28050.	No verified direct reference in this release
`At5g40230`	WAT1-related protein At5g40230.	No verified direct reference in this release
`At4g15540`	WAT1-related protein At4g15540.	No verified direct reference in this release
`At5g40210`	WAT1-related protein At5g40210.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_024010 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT3G28050

ath:AT3G28100

ath:AT5G40210

ath:AT5G40230

ath:AT5G40240

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.435

Rank 1 · TkA03G004820 · TK1151

Lysosome / Vacuole0.236

Rank 2 · TkA03G004820 · TK1151

Endoplasmic reticulum0.190

Rank 3 · TkA03G004820 · TK1151

Golgi apparatus0.073

Rank 4 · TkA03G004820 · TK1151

Cytoplasm0.066

Rank 5 · TkA03G004820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00892EamA29-159 aa

PF00892EamA188-325 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G004820	`PF00892`	EamA	29	159	3.5e-17	63.7
TkA03G004820	`PF00892`	EamA	188	325	3.5e-17	63.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FL08`	Arabidopsis thaliana	sp\|Q9FL08\|WTR42_ARATH WAT1-related protein At5g40240	41.400%	Swiss-Prot	Medium
`Q94JU2`	Arabidopsis thaliana	sp\|Q94JU2\|WTR18_ARATH WAT1-related protein At3g28050	42.400%	Swiss-Prot	Medium
`F4KHA8`	Arabidopsis thaliana	sp\|F4KHA8\|WTR41_ARATH WAT1-related protein At5g40230	41.900%	Swiss-Prot	Medium
`F4JK59`	Arabidopsis thaliana	sp\|F4JK59\|WTR33_ARATH WAT1-related protein At4g15540	39.800%	Swiss-Prot	Medium
`Q945L4`	Arabidopsis thaliana	sp\|Q945L4\|WTR40_ARATH WAT1-related protein At5g40210	40.800%	Swiss-Prot	Medium

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