TkA03G003620 | RubberDandelionOmics

Gene overview

TkA03G003620

Reference: TK1151 Chr: Chr03 Coordinates: 884365-887035 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2310 bp · TkA03G003620|TK1151|cDNA

ATGGCATCCACAAGCAAAGGTAGGAAGAAGTCTAAGAAACACAAGAAATTTGATGTTGATTATGAAGAAGATGAGCTTGTGTTTGACATGCCTATGGATTTCGAGGAAGAAGATGTGATTGCTGTAGATTTCGGTTCAATTACAGACCCGTTTCTGTCCAATATTTGTGAAGGAGATGAAAGTACTGATGAAGACCTGGTCCATCTTGATGAAGACGAGAATGACATTGCTGGGTCAGTTCTTGTTCACGATCCCACCAA...

CDS

Download CDS FASTA

2310 bp · TkA03G003620|TK1151|CDS

ATGGCATCCACAAGCAAAGGTAGGAAGAAGTCTAAGAAACACAAGAAATTTGATGTTGATTATGAAGAAGATGAGCTTGTGTTTGACATGCCTATGGATTTCGAGGAAGAAGATGTGATTGCTGTAGATTTCGGTTCAATTACAGACCCGTTTCTGTCCAATATTTGTGAAGGAGATGAAAGTACTGATGAAGACCTGGTCCATCTTGATGAAGACGAGAATGACATTGCTGGGTCAGTTCTTGTTCACGATCCCACCAA...

Protein

Download Protein FASTA

769 aa · TkA03G003620|TK1151|PROTEIN

MASTSKGRKKSKKHKKFDVDYEEDELVFDMPMDFEEEDVIAVDFGSITDPFLSNICEGDESTDEDLVHLDEDENDIAGSVLVHDPTKEWNVMEPRFAEKYQSFHHLKTCLVNYAVTHGYPLRFEKLESTRLLAKCGRDTDKKSCPFRLYASWMNTEKTVQVKSMNKKHLCARTFNFGHLVSPEWIASHLVKELILKPSMKLREIQEFIKRQFRITLSISKCHRAKEKTMVMIEGKIADHYSRIWDYAAEVQRSNPRSTVQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G003620`
TK1151 ID	TkA03G003620
OH-1004 ID	LXL04_024448
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	93.400
Protein coverage (%)	TK1151 100.000 / OH-1004 69.299 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkA03G003620`
Location	Chr03:884365-887035 (-)
Description	Protein of unknown function
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_024448` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	No functional description available
KEGG gene cross-reference	No functional description available

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.963

Rank 1 · TkA03G003620 · TK1151

Cytoplasm0.092

Rank 2 · TkA03G003620 · TK1151

Cell membrane0.022

Rank 3 · TkA03G003620 · TK1151

Endoplasmic reticulum0.014

Rank 4 · TkA03G003620 · TK1151

Mitochondrion0.012

Rank 5 · TkA03G003620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24532FIBL-242-46 aa

PF03108DBD_Tnp_Mut99-161 aa

PF10551MULE294-390 aa

PF00872Transposase_mut313-391 aa

PF24532FIBL-2541-554 aa

PF04434SWIM543-572 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G003620	`PF24532`	FIBL-2	42	46	5.1	7.7
TkA03G003620	`PF03108`	DBD_Tnp_Mut	99	161	2.3e-05	24.6
TkA03G003620	`PF10551`	MULE	294	390	2.4e-17	63.8
TkA03G003620	`PF00872`	Transposase_mut	313	391	2.8e-08	33.8
TkA03G003620	`PF24532`	FIBL-2	541	554	5.1	7.7
TkA03G003620	`PF04434`	SWIM	543	572	2e-08	34.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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