TkA02G614720 | RubberDandelionOmics

Gene overview

TkA02G614720

Reference: TK1151 Chr: Chr02 Coordinates: 158531645-158532637 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

678 bp · TkA02G614720|TK1151|cDNA

ATGCAATCACAAATTAAGAAATCCAAATATCCAGGCTTCAAGAAATCGACCATTACTGTTGATTACAGATTCCTCCAAACTCCTCTGTTATACGCCATCTTCAACATTGTCACCTGCTCTGCTATAATGTTTGAACCTGAAGCTACTGATTTGGTGGTAGTAACTCATGAATCTGAAAAAGTAAACGGTAGCGATATAAACACCGAACGTGCCGAAGATGAAGGTACTGATGAAAGTATACTCAGAAAGGTTTTCGATAA...

CDS

Download CDS FASTA

678 bp · TkA02G614720|TK1151|CDS

ATGCAATCACAAATTAAGAAATCCAAATATCCAGGCTTCAAGAAATCGACCATTACTGTTGATTACAGATTCCTCCAAACTCCTCTGTTATACGCCATCTTCAACATTGTCACCTGCTCTGCTATAATGTTTGAACCTGAAGCTACTGATTTGGTGGTAGTAACTCATGAATCTGAAAAAGTAAACGGTAGCGATATAAACACCGAACGTGCCGAAGATGAAGGTACTGATGAAAGTATACTCAGAAAGGTTTTCGATAA...

Protein

Download Protein FASTA

225 aa · TkA02G614720|TK1151|PROTEIN

MQSQIKKSKYPGFKKSTITVDYRFLQTPLLYAIFNIVTCSAIMFEPEATDLVVVTHESEKVNGSDINTERAEDEGTDESILRKVFDKPDDAYNFYNDYSFLHGFGIRKDDTIKNTTTNEAYRKMYVCNKEGFKRLEKNASIGNEKKRRRDVRTGCQAMLRITKQEDGKWLVDSFKDTHNHDMIMTPTEVTTATEQDACRPTWLSNIKLLYLSFCQYKTLILLKSK

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G614720`
TK1151 ID	TkA02G614720
OH-1004 ID	LXL04_025860
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	96.800
Protein coverage (%)	TK1151 84.000 / OH-1004 88.318 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G614720

Location Chr02:158531645-158532637 (+)

Description Similar to FRS7: Protein FAR1-RELATED SEQUENCE 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g80010`	Putative transcription activator involved in regulating light control of development.	Arabidopsis FHY3/FAR1 gene family and distinct roles of its members in light control of Arabidopsis development.2004 · DOI: 10.1104/pp.104.052191

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_025860 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0005634 nucleus Cellular Component

GO:0008270 zinc ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G80010

ath:AT3G06250

ath:AT4G38180

ath:AT5G18960

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.890

Rank 1 · TkA02G614720 · TK1151

Cytoplasm0.162

Rank 2 · TkA02G614720 · TK1151

Cell membrane0.030

Rank 3 · TkA02G614720 · TK1151

Mitochondrion0.026

Rank 4 · TkA02G614720 · TK1151

Endoplasmic reticulum0.021

Rank 5 · TkA02G614720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03101FAR193-182 aa

PF25911AHC1_C123-135 aa

PF21599ZSWIM3_N131-180 aa

PF25911AHC1_C165-179 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G614720	`PF03101`	FAR1	93	182	8.1e-25	88.1
TkA02G614720	`PF25911`	AHC1_C	123	135	0.095	13.0
TkA02G614720	`PF21599`	ZSWIM3_N	131	180	0.084	14.2
TkA02G614720	`PF25911`	AHC1_C	165	179	0.095	13.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9S793`	Arabidopsis thaliana	sp\|Q9S793\|FRS8_ARATH Protein FAR1-RELATED SEQUENCE 8	39.600%	Swiss-Prot	Low

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