TkA02G609710 | RubberDandelionOmics

Gene overview

TkA02G609710

Reference: TK1151 Chr: Chr02 Coordinates: 157284795-157287901 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1532 bp · TkA02G609710|TK1151|cDNA

ACGACTGTTGTCGGCTTGTAGTCACGATCCCCATATAAATCAATGAAGCAGGTACCAAGAACTCCATACAAAATCATCATAGAGAGGAACTCTCCTCCTCTGTTGTTTTGTGCGTGAATCTTTTCCCGTTTTTATTTTACCTTGCTGCCTTTATGCCGTGTAGTCTTGTACTTCCACTAGCTGCTGCTATGCACCTTGGTTTTTAGCTCCTTAATGTGAAAGAACTTTGAAAGTCAATTGAGGTGCTTTAACTTGAGGGT...

CDS

Download CDS FASTA

849 bp · TkA02G609710|TK1151|CDS

ATGTATGCTGAGACTGGCCTAATGTTTCCCTATTTTCAGAACTTCTCAACTGATGGTCAACAATTTGATGATTTCTGTCACTCACAGAAGTCTATTACTTGCTTGGATAACCTAATTCAGACGTCCACTGTATCAGATTACGATCTTGGGGGAGAAGGGGATCTTTTCAAAGCACCCGAACCTATAATAATTGAACCATTAATCAGCGGTCTTGACCCCATAACATCTACCATTTCAATGATCGCCTGTGGAGAAGACAC...

Protein

Download Protein FASTA

282 aa · TkA02G609710|TK1151|PROTEIN

MYAETGLMFPYFQNFSTDGQQFDDFCHSQKSITCLDNLIQTSTVSDYDLGGEGDLFKAPEPIIIEPLISGLDPITSTISMIACGEDTLSPQELKVTDIESLQKEEFLNDVFYECKNILAQEAAAATESSPLSEVLSFSFPVTTDENTENLHPSCQIPKSMSFDSLNSMDWIQGAQIKSSFLNFSELDFGNAYGMRRAFSDGDIKTLVDGNTGLIHYPLGQPPVMSERTLEDRMQKLSRYRNKKTKRNFGRKIKYACRKAL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G609710`
TK1151 ID	TkA02G609710
OH-1004 ID	LXL04_011830
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	90.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G609710

Location Chr02:157284795-157287901 (-)

Description Similar to COL5: Zinc finger protein CONSTANS-LIKE 5

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g57660`	Zinc finger protein CONSTANS-LIKE 5.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os09g0240200`	Probable transcription factor involved in the regulation of flowering time under short day (SD) conditions.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011830 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009908 flower development Biological Process

GO:0009909 regulation of flower development Biological Process

GO:0032922 circadian regulation of gene expression Biological Process

GO:0048577 negative regulation of short-day photoperiodism, flowering Biological Process

GO:0048579 negative regulation of long-day photoperiodism, flowering Biological Process

GO:2000028 regulation of photoperiodism, flowering Biological Process

GO:0005634 nucleus Cellular Component

GO:0016607 nuclear speck Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

KEGG gene cross-reference

ath:AT5G15850

ath:AT5G24930

ath:AT5G57660

dosa:Os09g0240200

osa:107276161

osa:4346474

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.799

Rank 1 · TkA02G609710 · TK1151

Cytoplasm0.321

Rank 2 · TkA02G609710 · TK1151

Cell membrane0.039

Rank 3 · TkA02G609710 · TK1151

Mitochondrion0.027

Rank 4 · TkA02G609710 · TK1151

Endoplasmic reticulum0.026

Rank 5 · TkA02G609710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF21287Kazal_CFAI16-37 aa

PF06203CCT232-274 aa

PF21287Kazal_CFAI251-258 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G609710	`PF21287`	Kazal_CFAI	16	37	0.61	11.2
TkA02G609710	`PF06203`	CCT	232	274	4e-17	62.7
TkA02G609710	`PF21287`	Kazal_CFAI	251	258	0.61	11.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FHH8`	Arabidopsis thaliana	sp\|Q9FHH8\|COL5_ARATH Zinc finger protein CONSTANS-LIKE 5	54.200%	Swiss-Prot	Low
`O82117`	Oryza sativa subsp. japonica	sp\|O82117\|CO3_ORYSJ Zinc finger protein CO3	36.000%	Swiss-Prot	Low

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