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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G606580
Reference: TK1151 Chr: Chr02 Coordinates: 156496716-156498939 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2150 bp · TkA02G606580|TK1151|cDNA

ATCACGGGTCCTTTGCCCAAAGTTAACACGAGCACTAACATTGCTCTTGAGTGGTTGGATCTCTCATTCACAAACTCATTAGGAGAACTACCCGACTCAATTGGCCAACTCATATCCCTAGACCACTTGTATCTCTTTGATTCTGGTTTGGTGGGCCCTCTTCCAAAATCCCTAGTCAACCTTAGGCACCTTATTGCTATTGATTTATCATATAACAAGCTTAATGGAACATTGCCTGCTTTCTTGTTCACTCTTCCATT...

CDS

Download CDS FASTA

1122 bp · TkA02G606580|TK1151|CDS

ATCACGGGTCCTTTGCCCAAAGTTAACACGAGCACTAACATTGCTCTTGAGTGGTTGGATCTCTCATTCACAAACTCATTAGGAGAACTACCCGACTCAATTGGCCAACTCATATCCCTAGACCACTTGTATCTCTTTGATTCTGGTTTGGTGGGCCCTCTTCCAAAATCCCTAGTCAACCTTAGGCACCTTATTGCTATTGATTTATCATATAACAAGCTTAATGGAACATTGCCTGCTTTCTTGTTCACTCTTCCATT...

Protein

Download Protein FASTA

373 aa · TkA02G606580|TK1151|PROTEIN

ITGPLPKVNTSTNIALEWLDLSFTNSLGELPDSIGQLISLDHLYLFDSGLVGPLPKSLVNLRHLIAIDLSYNKLNGTLPAFLFTLPLIQHINLDENMFSGGLPSEFYNCRSLQLLYLSSNQFNGEINQGSTPPSFVQLINLKFLSLSWNNFTGLWELESLLSSLPKLQTLDLSYSGVSIVTTNATHYHINPGFRGLALASCNLILFPESLQEMKDLEYLDLSNNDIHGEIPHWAGEIGGYRLSGLNLSHNSITGLPQSLW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G606580
TK1151 IDTkA02G606580
OH-1004 IDLXL04_011869
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)99.000
Protein coverage (%)TK1151 51.206 / OH-1004 19.670
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G606580
LocationChr02:156496716-156498939 (+)
DescriptionSimilar to RLP7: Receptor-like protein 7
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g45616 Receptor-like protein 6. No verified direct reference in this release
At4g13810 Receptor-like protein 47. No verified direct reference in this release
At2g32680 Involved in the perception of necrosis and ethylene-inducing peptide 1-like proteins (NLPs), that act as extracellular signals mediating immune activation.
An RLP23-SOBIR1-BAK1 complex mediates NLP-triggered immunity.2015 · DOI: 10.1038/nplants.2015.140
At4g13900 Receptor-like protein 49. No verified direct reference in this release
At2g25470 Receptor like protein 21. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011869 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0007165 signal transduction Biological Process
GO:0009791 post-embryonic development Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051707 response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G45616
ath:AT1G47890
ath:AT2G15080
ath:AT3G11010
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.737
Rank 1 · TkA02G606580 · TK1151
Endoplasmic reticulum0.129
Rank 2 · TkA02G606580 · TK1151
Nucleus0.091
Rank 3 · TkA02G606580 · TK1151
Cytoplasm0.086
Rank 4 · TkA02G606580 · TK1151
Extracellular0.034
Rank 5 · TkA02G606580 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13855LRR_815-47 aa
PF23598LRR_1415-82 aa
PF23286LRR_1315-88 aa
PF25019LRR_R13L1-DRL2115-45 aa
PF00560LRR_116-37 aa
PF12799LRR_416-46 aa
PF25013LRR_Zer-116-73 aa
PF13516LRR_619-25 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G606580PF13855LRR_815474.6e-2897.5
TkA02G606580PF23598LRR_1415828.1e-1348.6
TkA02G606580PF23286LRR_1315880.0001522.3
TkA02G606580PF25019LRR_R13L1-DRL2115450.1812.4
TkA02G606580PF00560LRR_116371.7e-3099.2
TkA02G606580PF12799LRR_416463.8e-2072.2
TkA02G606580PF25013LRR_Zer-116733e-0628.1
TkA02G606580PF13516LRR_619253.7e-0627.3
TkA02G606580PF00560LRR_139611.7e-3099.2
TkA02G606580PF12799LRR_439743.8e-2072.2
TkA02G606580PF24758LRR_At5g5637052934.7e-0730.4
TkA02G606580PF13855LRR_856974.6e-2897.5
TkA02G606580PF25019LRR_R13L1-DRL2160940.1812.4
TkA02G606580PF13516LRR_661753.7e-0627.3
TkA02G606580PF24048LRR_NXF1-561983.48.0
TkA02G606580PF29247LRR_MHP1-HER1-GIP362820.003217.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C637Arabidopsis thalianasp|Q9C637|RLP6_ARATH Receptor-like protein 629.500%Swiss-ProtLow
Q9SVN2Arabidopsis thalianasp|Q9SVN2|RLP47_ARATH Receptor-like protein 4735.100%Swiss-ProtLow
O48849Arabidopsis thalianasp|O48849|RLP23_ARATH Receptor like protein 2333.500%Swiss-ProtLow
Q9SVM3Arabidopsis thalianasp|Q9SVM3|RLP49_ARATH Receptor-like protein 4933.600%Swiss-ProtLow
Q9SKK2Arabidopsis thalianasp|Q9SKK2|RLP21_ARATH Receptor like protein 2127.500%Swiss-ProtLow

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