TkA02G603240 | RubberDandelionOmics

Gene overview

TkA02G603240

Reference: TK1151 Chr: Chr02 Coordinates: 155514203-155517419 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2100 bp · TkA02G603240|TK1151|cDNA

GAAGACTTCACCAATGGCGGGACAACATACTCCGTACTACACCCCCACCACCAAACCCAACGCCGCCGCCGCCGCCGCCTCCGCCCATCTCCTCCGTAAAAATAACGTTTTATTAGCTTGTCTTGTCTTCTTCCTCTGTTCTTTCTTTTACTTATTCGGTTCATGGCAAACCCATGTCCCCTCCTCTTCCACTGCCACCTCCCTCCGCACCACCACCGTCAACTGCGACGCCACCACATCCAGCTACAACTCAACCGTCG...

CDS

Download CDS FASTA

1944 bp · TkA02G603240|TK1151|CDS

ATGGCGGGACAACATACTCCGTACTACACCCCCACCACCAAACCCAACGCCGCCGCCGCCGCCGCCTCCGCCCATCTCCTCCGTAAAAATAACGTTTTATTAGCTTGTCTTGTCTTCTTCCTCTGTTCTTTCTTTTACTTATTCGGTTCATGGCAAACCCATGTCCCCTCCTCTTCCACTGCCACCTCCCTCCGCACCACCACCGTCAACTGCGACGCCACCACATCCAGCTACAACTCAACCGTCGTAGCTGACAAATA...

Protein

Download Protein FASTA

647 aa · TkA02G603240|TK1151|PROTEIN

MAGQHTPYYTPTTKPNAAAAAASAHLLRKNNVLLACLVFFLCSFFYLFGSWQTHVPSSSTATSLRTTTVNCDATTSSYNSTVVADKYKDLDFTAHHSAAADDSITVKTYPPCSVKYSEYTPCTDQKRSLKFSRDRLIYRERHCPEKNELLKCRIPAPFGYKNPFKWPMSRDLAWYANVPHKDLTVEKAVQNWIRFEGDRFRFPGGGTMFPNGADAYIDDIGKLINLNDGSIRTAIDTGCGVASWGAYLLSRNIIAMSFAP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G603240`
TK1151 ID	TkA02G603240
OH-1004 ID	LXL04_011929
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	97.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G603240

Location Chr02:155514203-155517419 (+)

Description Similar to At2g45750: Probable methyltransferase PMT16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45750`	Probable methyltransferase PMT16.	No verified direct reference in this release
`At4g00750`	Probable methyltransferase PMT15.	No verified direct reference in this release
`At4g10440`	Probable methyltransferase PMT17.	No verified direct reference in this release
`At1g33170`	Probable methyltransferase PMT18.	No verified direct reference in this release
`At1g26850`	Probable methyltransferase PMT2.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011929 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0032259 methylation Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005768 endosome Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005797 Golgi medial cisterna Cellular Component

GO:0005802 trans-Golgi network Cellular Component

GO:0005829 cytosol Cellular Component

GO:0008168 methyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT1G26850

ath:AT1G33170

ath:AT2G45750

ath:AT4G00750

ath:AT4G10440

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.756

Rank 1 · TkA02G603240 · TK1151

Cell membrane0.076

Rank 2 · TkA02G603240 · TK1151

Endoplasmic reticulum0.069

Rank 3 · TkA02G603240 · TK1151

Extracellular0.057

Rank 4 · TkA02G603240 · TK1151

Cytoplasm0.037

Rank 5 · TkA02G603240 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06687SUR733-132 aa

PF20922Anamorsin_N61-118 aa

PF03141Methyltransf_29118-630 aa

PF13649Methyltransf_25235-326 aa

PF13847Methyltransf_31235-351 aa

PF08241Methyltransf_11236-329 aa

PF20922Anamorsin_N294-333 aa

PF13649Methyltransf_25539-585 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G603240	`PF06687`	SUR7	33	132	0.071	13.4
TkA02G603240	`PF20922`	Anamorsin_N	61	118	0.058	13.8
TkA02G603240	`PF03141`	Methyltransf_29	118	630	4.3e-228	758.7
TkA02G603240	`PF13649`	Methyltransf_25	235	326	3e-06	28.6
TkA02G603240	`PF13847`	Methyltransf_31	235	351	0.0001	22.8
TkA02G603240	`PF08241`	Methyltransf_11	236	329	8.3e-09	36.7
TkA02G603240	`PF20922`	Anamorsin_N	294	333	0.058	13.8
TkA02G603240	`PF13649`	Methyltransf_25	539	585	3e-06	28.6
TkA02G603240	`PF08241`	Methyltransf_11	542	589	8.3e-09	36.7
TkA02G603240	`PF13847`	Methyltransf_31	547	593	0.0001	22.8
TkA02G603240	`PF20922`	Anamorsin_N	569	594	0.058	13.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O80844`	Arabidopsis thaliana	sp\|O80844\|PMTG_ARATH Probable methyltransferase PMT16	65.800%	Swiss-Prot	High
`Q9ZPH9`	Arabidopsis thaliana	sp\|Q9ZPH9\|PMTF_ARATH Probable methyltransferase PMT15	65.500%	Swiss-Prot	High
`Q9SZX8`	Arabidopsis thaliana	sp\|Q9SZX8\|PMTH_ARATH Probable methyltransferase PMT17	61.500%	Swiss-Prot	High
`Q9C884`	Arabidopsis thaliana	sp\|Q9C884\|PMTI_ARATH Probable methyltransferase PMT18	60.200%	Swiss-Prot	High
`B9DFI7`	Arabidopsis thaliana	sp\|B9DFI7\|PMT2_ARATH Probable methyltransferase PMT2	57.400%	Swiss-Prot	High

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