Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1312 bp · TkA02G602800|TK1151|cDNA
AATAATTAGATATATCTAAAATAAAAGAATTTGTAGAAGTAGAAAAATGCTGATTTTACATGAACAATGTACCAAAATTGTAAAATATAAAACTTTTGGACCATTTGTAATTTAGAAGTAAAAGAAAATATCAGAATCCAAGCCCAAACGTTTAAAAAACTAAAAAAGTGGACCCTTGAGTCGTTGAGTATAGTCAACAGTGGCTAGAGGTTCCTTCACGTCACCTTCCCAAACACATATTCTCTTCGTCTCTCTCTTTC...
732 bp · TkA02G602800|TK1151|CDS
ATGAGTAGCCAGATAGAAGTGCAAAATCATCTAAATGGCAGTTTCCCAGCTGATATTCCCGACGATTTGAAAAACTTTTTGTCAGAAGTAGACGGCGTTAGTTTTGAAGAAGCTATCTTGCAACAGGCAAGCGCTTATCAATCATATCAAGAATCTGAGAGGAACAGGGTTGCGGTTACAGATGATGAGCATAGCGGTGACGCTAGCTGTTCTTCAGAGGATGAGGAAGAAGATGAAGATGAAGATGATGGCGAATCCTC...
Protein
Download Protein FASTA243 aa · TkA02G602800|TK1151|PROTEIN
MSSQIEVQNHLNGSFPADIPDDLKNFLSEVDGVSFEEAILQQASAYQSYQESERNRVAVTDDEHSGDASCSSEDEEEDEDEDDGESSRHEIDDSQEAMDEALARTLQELGEEYDEYFIREFNGRASGPTESPISTPSISSPDSSQEDPDPDNMRYEELLNLGETVGVENVGLSPAQIARLPNSIYTSGMFSKNNEENCAICQENFTLWKPMTTLPCSHQYHRKCIIKWLKLKKNCPICQKEVV
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G602800 |
|---|---|
| TK1151 ID | TkA02G602800 |
| OH-1004 ID | LXL04_011930 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 95.885 / OH-1004 88.931Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G602800 |
|---|---|
| Location | Chr02:155413663-155415919 (-) |
| Description | Similar to BBR: E3 ubiquitin ligase BIG BROTHER-related |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0008285 negative regulation of cell population proliferation Biological Process GO:0009845 seed germination Biological Process GO:0009908 flower development Biological Process GO:0010218 response to far red light Biological Process GO:0010228 vegetative to reproductive phase transition of meristem Biological Process GO:0016567 protein ubiquitination Biological Process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process Biological Process GO:0046621 negative regulation of organ growth Biological Process GO:0048437 floral organ development Biological Process GO:0051865 protein autoubiquitination Biological Process GO:1900057 positive regulation of leaf senescence Biological Process GO:0005634 nucleus Cellular Component |
| KEGG gene cross-reference | ath:AT3G19910 ath:AT3G63530 ath:AT4G34040 ath:AT5G42940 dosa:Os01g0667700 osa:4326322 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF15750UBZ_FAAP203-11 aaPF04147Nop1430-113 aaPF02724CDC4535-95 aaPF26230RESC1138-112 aaPF04889Cwf_Cwc_1540-115 aaPF05327RRN345-116 aaPF04931DNA_pol_phi46-110 aaPF09073BUD2251-149 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G602800 | PF15750 | UBZ_FAAP20 | 3 | 11 | 0.069 | 13.7 |
| TkA02G602800 | PF04147 | Nop14 | 30 | 113 | 2.7 | 6.8 |
| TkA02G602800 | PF02724 | CDC45 | 35 | 95 | 7.8 | 5.4 |
| TkA02G602800 | PF26230 | RESC11 | 38 | 112 | 4.3 | 5.9 |
| TkA02G602800 | PF04889 | Cwf_Cwc_15 | 40 | 115 | 0.061 | 13.9 |
| TkA02G602800 | PF05327 | RRN3 | 45 | 116 | 1.0 | 8.5 |
| TkA02G602800 | PF04931 | DNA_pol_phi | 46 | 110 | 1.2 | 7.9 |
| TkA02G602800 | PF09073 | BUD22 | 51 | 149 | 1.7 | 8.6 |
| TkA02G602800 | PF04546 | Sigma70_ner | 56 | 143 | 0.0067 | 17.1 |
| TkA02G602800 | PF14447 | Prok-RING_4 | 190 | 204 | 2.2 | 9.0 |
| TkA02G602800 | PF08746 | zf-RING-like | 190 | 201 | 3.9 | 8.4 |
| TkA02G602800 | PF12906 | RINGv | 191 | 201 | 9.5 | 7.2 |
| TkA02G602800 | PF12678 | zf-rbx1 | 192 | 239 | 7.2e-08 | 33.3 |
| TkA02G602800 | PF23413 | zf_RING_Vps8_fungal | 192 | 203 | 0.071 | 13.1 |
| TkA02G602800 | PF14570 | zf-RING_4 | 192 | 205 | 8.7 | 6.9 |
| TkA02G602800 | PF17120 | zf-RING_16 | 193 | 236 | 0.85 | 10.0 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.