TkA02G600560 | RubberDandelionOmics

Gene overview

TkA02G600560

Reference: TK1151 Chr: Chr02 Coordinates: 154864843-154865379 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

537 bp · TkA02G600560|TK1151|cDNA

ATGGCTAACCGTCGAAGCCCCCAAAATCAAACCTCTCAATCCACCGCACCTGGTGGCTCCTCCGGCGGCCACCCAGCTTACCATGGCATCCGGTTGCGATCTGGAAAATGGGTTTCTGAAATTCGTGAACCAAACAAAACCAGTCGCATATGGCTCGGCACTTATCCCACACCGGAAATGGCGGCAGCTGCATACGATGTGGCTGCATTGGCGCTCAAAGGTGTGTATGCGGTTCTAAACTTCCCGGAGTCTGCTATCTC...

CDS

Download CDS FASTA

537 bp · TkA02G600560|TK1151|CDS

ATGGCTAACCGTCGAAGCCCCCAAAATCAAACCTCTCAATCCACCGCACCTGGTGGCTCCTCCGGCGGCCACCCAGCTTACCATGGCATCCGGTTGCGATCTGGAAAATGGGTTTCTGAAATTCGTGAACCAAACAAAACCAGTCGCATATGGCTCGGCACTTATCCCACACCGGAAATGGCGGCAGCTGCATACGATGTGGCTGCATTGGCGCTCAAAGGTGTGTATGCGGTTCTAAACTTCCCGGAGTCTGCTATCTC...

Protein

Download Protein FASTA

178 aa · TkA02G600560|TK1151|PROTEIN

MANRRSPQNQTSQSTAPGGSSGGHPAYHGIRLRSGKWVSEIREPNKTSRIWLGTYPTPEMAAAAYDVAALALKGVYAVLNFPESAISYTLPDCPTADDIRAAAAQAAAARAPGGTMTRGGTSTAPAPAGGYMDDEPSYGSPNLWSDMAGGMLLPPPRMDSSPRDDGPDYSGGGNLWNY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G600560`
TK1151 ID	TkA02G600560
OH-1004 ID	LXL04_011946
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G600560

Location Chr02:154864843-154865379 (+)

Description Similar to ERF025: Ethylene-responsive transcription factor ERF025

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g63040`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At5g52020`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At1g12630`	Probably acts as a transcriptional activator.	No verified direct reference in this release
`At4g25490`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis.2005 · DOI: 10.1104/pp.105.068510
`At5g51990`	Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'.	Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis.2002 · DOI: 10.1104/pp.006478

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011946 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0009409 response to cold Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009631 cold acclimation Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0019760 glucosinolate metabolic process Biological Process

GO:0045893 positive regulation of DNA-templated transcription Biological Process

GO:0050832 defense response to fungus Biological Process

GO:0005634 nucleus Cellular Component

GO:0000976 transcription cis-regulatory region binding Molecular Function

GO:0003677 DNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G25490

ath:AT5G11590

ath:AT5G51990

ath:AT5G52020

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.717

Rank 1 · TkA02G600560 · TK1151

Cytoplasm0.336

Rank 2 · TkA02G600560 · TK1151

Endoplasmic reticulum0.072

Rank 3 · TkA02G600560 · TK1151

Extracellular0.059

Rank 4 · TkA02G600560 · TK1151

Cell membrane0.052

Rank 5 · TkA02G600560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00847AP226-74 aa

PF01883FeS_assembly_P60-76 aa

PF01883FeS_assembly_P86-115 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G600560	`PF00847`	AP2	26	74	3.6e-11	43.9
TkA02G600560	`PF01883`	FeS_assembly_P	60	76	0.63	11.1
TkA02G600560	`PF01883`	FeS_assembly_P	86	115	0.63	11.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9CAN9`	Arabidopsis thaliana	sp\|Q9CAN9\|ERF26_ARATH Ethylene-responsive transcription factor ERF026	54.900%	Swiss-Prot	High
`Q9FJ90`	Arabidopsis thaliana	sp\|Q9FJ90\|ERF25_ARATH Ethylene-responsive transcription factor ERF025	50.800%	Swiss-Prot	High
`Q38Q39`	Arabidopsis thaliana	sp\|Q38Q39\|ERF27_ARATH Ethylene-responsive transcription factor ERF027	44.400%	Swiss-Prot	Medium
`P93835`	Arabidopsis thaliana	sp\|P93835\|DRE1B_ARATH Dehydration-responsive element-binding protein 1B	47.600%	Swiss-Prot	Medium
`Q9FJ93`	Arabidopsis thaliana	sp\|Q9FJ93\|DRE1D_ARATH Dehydration-responsive element-binding protein 1D	46.000%	Swiss-Prot	Medium

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