TkA02G592420 | RubberDandelionOmics

Gene overview

TkA02G592420

Reference: TK1151 Chr: Chr02 Coordinates: 152846757-152849097 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1788 bp · TkA02G592420|TK1151|cDNA

ACAATATTAGGTACTCATTACACCATTTTAGCATTATAAAAACCATTCCAACAACAAGAAAAAAAATCAGGAAATCAAAACATGGCAATGAAGCTTGCATTCTTCGTATCCTTCATCATCACATTCCTCATCTCCAACTCATCGGAAACCACCACCTCCGGCACCATAAACTGGTGGTGCAGCCAAACCCCATACCACCAAACATGCAACCACTATATCCCCCAACGTCACCCCAACATGACGTCAACCATAACCACAAA...

CDS

Download CDS FASTA

1548 bp · TkA02G592420|TK1151|CDS

ATGGCAATGAAGCTTGCATTCTTCGTATCCTTCATCATCACATTCCTCATCTCCAACTCATCGGAAACCACCACCTCCGGCACCATAAACTGGTGGTGCAGCCAAACCCCATACCACCAAACATGCAACCACTATATCCCCCAACGTCACCCCAACATGACGTCAACCATAACCACAAACCAGTTCCTCGATATGAGTGTACAAGCCGCCATTGATGACGCACGTGTGGTTCTGAAACGAACCCAATGGATCGAGTCCAA...

Protein

Download Protein FASTA

515 aa · TkA02G592420|TK1151|PROTEIN

MAMKLAFFVSFIITFLISNSSETTTSGTINWWCSQTPYHQTCNHYIPQRHPNMTSTITTNQFLDMSVQAAIDDARVVLKRTQWIESKYPHVPGKSLWASCVEYFDGIVFTLNLVLSNTYQSTPLDVQTWLSASLAYINVCEKGFELINMKNTMLPIISTNLTQLLLNSLAISVRIKGSDDNPWLGDWKHTVETPDVVVAQDGSGNFETVQEAVNAVRYHRKDGRYVIYVKGGVYEENVVIPKTVERVTIYGDGINTTIIT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G592420`
TK1151 ID	TkA02G592420
OH-1004 ID	LXL04_012021
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	98.300
Protein coverage (%)	TK1151 100.000 / OH-1004 84.967 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G592420

Location Chr02:152846757-152849097 (+)

Description Similar to PECS-2.1: Pectinesterase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g45220`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At3g47400`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At4g00190`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release
`At1g23200`	Acts in the modification of cell walls via demethylesterification of cell wall pectin.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012021 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009617 response to bacterium Biological Process

GO:0009620 response to fungus Biological Process

GO:0042545 cell wall modification Biological Process

GO:0045490 pectin catabolic process Biological Process

GO:0050829 defense response to Gram-negative bacterium Biological Process

GO:0005576 extracellular region Cellular Component

GO:0010494 cytoplasmic stress granule Cellular Component

GO:0048046 apoplast Cellular Component

GO:0004857 enzyme inhibitor activity Molecular Function

GO:0030599 pectinesterase activity Molecular Function

GO:0046910 pectinesterase inhibitor activity Molecular Function

KEGG gene cross-reference

ath:AT1G23200

ath:AT2G45220

ath:AT3G47400

ath:AT4G00190

cit:102577945

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.360

Rank 1 · TkA02G592420 · TK1151

Lysosome / Vacuole0.245

Rank 2 · TkA02G592420 · TK1151

Cytoplasm0.142

Rank 3 · TkA02G592420 · TK1151

Cell membrane0.137

Rank 4 · TkA02G592420 · TK1151

Endoplasmic reticulum0.132

Rank 5 · TkA02G592420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01095Pectinesterase23-61 aa

PF04043PMEI28-171 aa

PF01095Pectinesterase195-497 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G592420	`PF01095`	Pectinesterase	23	61	3.1e-111	371.6
TkA02G592420	`PF04043`	PMEI	28	171	6.4e-20	72.6
TkA02G592420	`PF01095`	Pectinesterase	195	497	3.1e-111	371.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22149`	Arabidopsis thaliana	sp\|O22149\|PME17_ARATH Probable pectinesterase/pectinesterase inhibitor 17	38.300%	Swiss-Prot	Medium
`Q9STY3`	Arabidopsis thaliana	sp\|Q9STY3\|PME33_ARATH Probable pectinesterase/pectinesterase inhibitor 33	37.100%	Swiss-Prot	Medium
`O81320`	Arabidopsis thaliana	sp\|O81320\|PME38_ARATH Putative pectinesterase/pectinesterase inhibitor 38	40.800%	Swiss-Prot	Medium
`O49298`	Arabidopsis thaliana	sp\|O49298\|PME6_ARATH Probable pectinesterase/pectinesterase inhibitor 6	38.400%	Swiss-Prot	Medium

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