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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G590150
Reference: TK1151 Chr: Chr02 Coordinates: 152289404-152293695 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3626 bp · TkA02G590150|TK1151|cDNA

AGGAAATGGGGGAAGTAAAGAAAAAGAGAAAAAGTAAAGGGGGGAAATAGGAATAAGAGCTTACCTGGTACTACCAGTAGAAATAGATGAACACGTAGTAGTTGTAGTTTGTAGAAGTAGAAGTAGAAGTAGAAGGTCTCTTCATCATCTTCAATCACTACAAAAACCCACTCATCGAGGATAAAAACAATCATCATGGATATGAAACATGCAAGCACTCCTAAAAAGCAACAATCGAAACCCCCCATTCCTCATTTTGC...

CDS

Download CDS FASTA

3081 bp · TkA02G590150|TK1151|CDS

ATGAACCACCACCACCGTCGGATGTGTTTCATCTTCTTAATTTCTCTTCCTCTTCTTCTTTCCTCTGCTTCCACCACCACCACCATTCCTCTGCAACTTGTTTCACTTCTTTCTCTGAAATCATCTTTGGTTGACCCGTTGAATACGTTTCAGGATTGGGATCCATCACCTAATTCGTTATCTAAACCTGGATTTGCACCTGTTTGGTGTTCTTGGTCTGGTATTAGATGTGATCAGAGAACGTTTCAGATAAAATCATT...

Protein

Download Protein FASTA

1026 aa · TkA02G590150|TK1151|PROTEIN

MNHHHRRMCFIFLISLPLLLSSASTTTTIPLQLVSLLSLKSSLVDPLNTFQDWDPSPNSLSKPGFAPVWCSWSGIRCDQRTFQIKSLDISNRNLSGVIPENIKYLMHLHHLNISVNNFAGTLPTAIFELTFLRTLDVNHNFFNSTFPPGISKLKFLTYFNAYSNSFTGPLPEEIASLRFLEHLNLGGSYFDGEIPKSYGGFQRLKFLYLAGNSLGGEIPAQLGFMTSLQRLEFGYNAFSGGLPTQFASLSNLSFLDISSA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G590150
TK1151 IDTkA02G590150
OH-1004 IDLXL04_012051
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G590150
LocationChr02:152289404-152293695 (+)
DescriptionSimilar to TDR: Leucine-rich repeat receptor-like protein kinase TDR
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g61480 Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development. No verified direct reference in this release
At4g28650 Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.
A receptor heteromer mediates the male perception of female attractants in plants.2016 · DOI: 10.1038/nature16975
At1g08590 Involved in the regulation of procambium maintenance and polarity during vascular-tissue development. No verified direct reference in this release
At3g49670 LRR-rich receptor-like kinase (LRR-RLK) implicated in the detection of the CLAVATA-family peptides (CLEs), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and, probably, of PBL34, PBL35 and PBL36. No verified direct reference in this release
At5g65700 LRR-rich receptor-like kinase (LRR-RLK) that, similarly to CLV1 and BAM3, participates in the detection of the CLAVATA-family peptides (e.g. CLE25, CLE26 and CLE45), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and of PBL34, PBL35 and PBL36. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_012051 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006468 protein phosphorylation Biological Process
GO:0009755 hormone-mediated signaling pathway Biological Process
GO:0009934 regulation of meristem structural organization Biological Process
GO:0010067 procambium histogenesis Biological Process
GO:0010075 regulation of meristem growth Biological Process
GO:0010078 maintenance of root meristem identity Biological Process
GO:0010087 phloem or xylem histogenesis Biological Process
GO:0010088 phloem development Biological Process
GO:0010089 xylem development Biological Process
GO:0010183 pollen tube guidance Biological Process
GO:0010223 secondary shoot formation Biological Process
GO:0030154 cell differentiation Biological Process
KEGG gene cross-reference
ath:AT1G08590
ath:AT3G49670
ath:AT4G20270
ath:AT4G28650
ath:AT5G61480
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.886
Rank 1 · TkA02G590150 · TK1151
Endoplasmic reticulum0.079
Rank 2 · TkA02G590150 · TK1151
Cytoplasm0.058
Rank 3 · TkA02G590150 · TK1151
Nucleus0.039
Rank 4 · TkA02G590150 · TK1151
Lysosome / Vacuole0.022
Rank 5 · TkA02G590150 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_233-78 aa
PF23211LRR_LRWD183-139 aa
PF29252LRR_NLRC483-114 aa
PF00560LRR_184-105 aa
PF13855LRR_884-140 aa
PF12799LRR_484-122 aa
PF23598LRR_1493-160 aa
PF25013LRR_Zer-1102-120 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G590150PF08263LRRNT_233780.007817.2
TkA02G590150PF23211LRR_LRWD1831391.5e-0525.5
TkA02G590150PF29252LRR_NLRC4831140.1611.9
TkA02G590150PF00560LRR_1841052.4e-52164.3
TkA02G590150PF13855LRR_8841401e-30105.9
TkA02G590150PF12799LRR_4841224.7e-2897.3
TkA02G590150PF23598LRR_14931606.7e-34117.9
TkA02G590150PF25013LRR_Zer-11021202e-0525.5
TkA02G590150PF13516LRR_61051180.000122.8
TkA02G590150PF00560LRR_11071282.4e-52164.3
TkA02G590150PF12799LRR_41081454.7e-2897.3
TkA02G590150PF24758LRR_At5g563701191508.2e-0832.9
TkA02G590150PF13516LRR_61301400.000122.8
TkA02G590150PF00560LRR_11321532.4e-52164.3
TkA02G590150PF13855LRR_81321871e-30105.9
TkA02G590150PF12799LRR_41321644.7e-2897.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FII5Arabidopsis thalianasp|Q9FII5|TDR_ARATH Leucine-rich repeat receptor-like protein kinase TDR73.900%Swiss-ProtLow
Q9M0G7Arabidopsis thalianasp|Q9M0G7|MIK1_ARATH MDIS1-interacting receptor like kinase 149.500%Swiss-ProtLow
Q9FRS6Arabidopsis thalianasp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL145.400%Swiss-ProtLow
Q9M2Z1Arabidopsis thalianasp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM248.600%Swiss-ProtLow
O49545Arabidopsis thalianasp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM146.500%Swiss-ProtLow

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