TkA02G584340 | RubberDandelionOmics

Gene overview

TkA02G584340

Reference: TK1151 Chr: Chr02 Coordinates: 150768902-150774484 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3066 bp · TkA02G584340|TK1151|cDNA

AACGTTGAAGCCGTGACTACCAAACAAGCAACGTTAGGAGAGAAAATAAAGGAGATATTTGGCGAAAATTAAGTCACGATTTGATAGAGGGGGTCCATGTTCTAGTCACGTGGTCTTGCTTCCCTCCCCCATAAATCATAACTCCCACCCCACCCCACCTAGGAATCTCCTTCTTTATATGGAAAAATGCGTTACTTTTTTCAATATTGATTTAATCAAGCCTAATAAAGATTATCGGTTTCAGCTGGAATTTAGCAATT...

CDS

Download CDS FASTA

2343 bp · TkA02G584340|TK1151|CDS

ATGGATCTTGAATACGGAAAATGTTGGGCGAATTCTAAGAAGGATTCATGGAGGACGACTTTGCTGTTAGCTTATCAAAGCCTTGGTGTCGTCTATGGTGACCTCAGCATATCTCCACTTTATGTTTACAAAAGTACATTTGCAGAAGACATTCATCATTCCGAAACAAACGAAGAGATTTTTGGGGTTCTTTCTTTTATTTTCTGGACATTAACGCTTGTCCCTCTTTTCAAATACGTCTTCATAGTCCTCCGAGCTGA...

Protein

Download Protein FASTA

780 aa · TkA02G584340|TK1151|PROTEIN

MDLEYGKCWANSKKDSWRTTLLLAYQSLGVVYGDLSISPLYVYKSTFAEDIHHSETNEEIFGVLSFIFWTLTLVPLFKYVFIVLRADDNGEGGTFALYSSICRNAKVSLLPNRQVADESLSTYKLEQSPERKNNSKVKMLLEKYKFLHTALLILVLLGTCMVIGDGLLTPAISVFSAVSGLELSMSKDHHQYAVIPITCFILVCLFALQHYGTHRVGFFFAPIVLLWLICISALGVYNIYHWNPQVYQALSPYYMLKFFR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G584340`
TK1151 ID	TkA02G584340
OH-1004 ID	LXL04_012166
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.900
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA02G584340

Location Chr02:150768902-150774484 (-)

Description Similar to POT2: Potassium transporter 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g40540`	Low-affinity potassium transporter.	A mutation in the Arabidopsis KT2/KUP2 potassium transporter gene affects shoot cell expansion.2002 · DOI: 10.1105/tpc.010322
`At1g70300`	Probable potassium transporter.	No verified direct reference in this release
`At5g14880`	Probable potassium transporter.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os07g0679000`	High-affinity potassium transporter.	No verified direct reference in this release
`Os03g0337500`	High-affinity potassium transporter.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012166 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006813 potassium ion transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0016020 membrane Cellular Component

GO:0015079 potassium ion transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G70300

ath:AT2G40540

ath:AT5G14880

dosa:Os07g0679000

osa:9271735

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.456

Rank 1 · TkA02G584340 · TK1151

Lysosome / Vacuole0.324

Rank 2 · TkA02G584340 · TK1151

Cytoplasm0.144

Rank 3 · TkA02G584340 · TK1151

Endoplasmic reticulum0.105

Rank 4 · TkA02G584340 · TK1151

Golgi apparatus0.095

Rank 5 · TkA02G584340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF06040Adeno_E315-47 aa

PF02705K_trans22-496 aa

PF06040Adeno_E3419-445 aa

PF27818HBEGF_C422-441 aa

PF22776K_trans_C527-778 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G584340	`PF06040`	Adeno_E3	15	47	0.16	12.9
TkA02G584340	`PF02705`	K_trans	22	496	1.4e-165	551.9
TkA02G584340	`PF06040`	Adeno_E3	419	445	0.16	12.9
TkA02G584340	`PF27818`	HBEGF_C	422	441	0.2	12.1
TkA02G584340	`PF22776`	K_trans_C	527	778	2.9e-28	99.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22881`	Arabidopsis thaliana	sp\|O22881\|POT2_ARATH Potassium transporter 2	78.700%	Swiss-Prot	High
`Q8W4I4`	Arabidopsis thaliana	sp\|Q8W4I4\|POT6_ARATH Potassium transporter 6	63.200%	Swiss-Prot	High
`Q9M7J9`	Arabidopsis thaliana	sp\|Q9M7J9\|POT8_ARATH Potassium transporter 8	63.800%	Swiss-Prot	High
`Q7XIV8`	Oryza sativa subsp. japonica	sp\|Q7XIV8\|HAK9_ORYSJ Probable potassium transporter 9	73.600%	Swiss-Prot	High
`Q8VXB5`	Oryza sativa subsp. japonica	sp\|Q8VXB5\|HAK8_ORYSJ Putative potassium transporter 8	72.800%	Swiss-Prot	High

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