TkA02G579420 | RubberDandelionOmics

Gene overview

TkA02G579420

Reference: TK1151 Chr: Chr02 Coordinates: 149494050-149496814 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2677 bp · TkA02G579420|TK1151|cDNA

TGTAACCGTTGACAGAGTAACACGTGTCGTTCTACTATAGCTTACCGTGTATGACAGTACGTCACCTCACTCTATACATTCTACTGGTAACAGATTTTCTGATATTTAATTTCTTTTCAATTTCAAATATTCATTTTCATTTATTATCTCTCTCTCTCTCTCTATTTCTCTCCCAAAGTCCCAATCAAAATTTTCCGTTCATATCAACCGATGCAAAACATCGTCGCCGGCGTCTACCCGACCATCAGATGACGACATTA...

CDS

Download CDS FASTA

1602 bp · TkA02G579420|TK1151|CDS

ATGAGTGATAATGCACTTCGTGTCTCCTTCGAATCAATTGTTGCTGGATTGGATTTTACTTGTGGTTTAACAACTAGTAACCTCTCTGTAATCTGCTGGGGAGAAGGATGGGTGAGAAACGCTTCGTATCCATTAGACTTCCAGCTTCCACTGAGACAAATTCTTCCAGGTCCATGTGTTACATCCGCTTGCAGTTGTGGTATCTATGCTCAGTCTCAAATTCTTTGTTCTGGCTATGGATCGATATGTAAGCCTTGTGA...

Protein

Download Protein FASTA

533 aa · TkA02G579420|TK1151|PROTEIN

MSDNALRVSFESIVAGLDFTCGLTTSNLSVICWGEGWVRNASYPLDFQLPLRQILPGPCVTSACSCGIYAQSQILCSGYGSICKPCDLSILVSQIPPSAPPPPPPGDVNVPRSSPSRPLRRGLLAFAIVGSIGAFAGICTIIYCLWTGVCCGNKKIHNSVQPTITSTNNPPQFSNSSPASRSSTIRRQASRAFRRQRSGTSSKHADREEEFTFADLALASDNFSQENKIGAGSFGVVYKGKLIDGREVAIKRGDPSQKTK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA02G579420`
TK1151 ID	TkA02G579420
OH-1004 ID	LXL04_012236
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	95.300
Protein coverage (%)	TK1151 100.000 / OH-1004 67.298 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA02G579420

Location Chr02:149494050-149496814 (-)

Description Similar to CCR3: Putative serine/threonine-protein kinase-like protein CCR3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g55950`	Serine/threonine-protein kinase.	No verified direct reference in this release
`At5g47850`	Serine/threonine-protein kinase-like protein CCR4.	No verified direct reference in this release
`At3g59420`	Controls formative cell division in meristems, including root tips and lateral root initiation zones of the pericycle, in response to CLE40 signal.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0637800`	Receptor protein kinase.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_012236 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009786 regulation of asymmetric cell division Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0010311 lateral root formation Biological Process

GO:0032877 positive regulation of DNA endoreduplication Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048364 root development Biological Process

GO:0048439 flower morphogenesis Biological Process

GO:0048829 root cap development Biological Process

GO:0080136 priming of cellular response to stress Biological Process

GO:0090392 sepal giant cell differentiation Biological Process

GO:0090627 plant epidermal cell differentiation Biological Process

GO:0099402 plant organ development Biological Process

KEGG gene cross-reference

ath:AT3G55950

ath:AT3G59420

ath:AT5G47850

dosa:Os03g0637800

zma:542346

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.838

Rank 1 · TkA02G579420 · TK1151

Cytoplasm0.100

Rank 2 · TkA02G579420 · TK1151

Nucleus0.079

Rank 3 · TkA02G579420 · TK1151

Endoplasmic reticulum0.075

Rank 4 · TkA02G579420 · TK1151

Lysosome / Vacuole0.025

Rank 5 · TkA02G579420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13540RCC1_212-35 aa

PF13540RCC1_265-80 aa

PF00069Pkinase223-506 aa

PF07714PK_Tyr_Ser-Thr225-509 aa

PF03109ABC1226-257 aa

PF01636APH266-305 aa

PF01636APH344-384 aa

PF03109ABC1345-381 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA02G579420	`PF13540`	RCC1_2	12	35	0.0047	17.4
TkA02G579420	`PF13540`	RCC1_2	65	80	0.0047	17.4
TkA02G579420	`PF00069`	Pkinase	223	506	8.2e-43	147.4
TkA02G579420	`PF07714`	PK_Tyr_Ser-Thr	225	509	7.9e-42	144.1
TkA02G579420	`PF03109`	ABC1	226	257	1.9e-05	24.7
TkA02G579420	`PF01636`	APH	266	305	0.018	15.5
TkA02G579420	`PF01636`	APH	344	384	0.018	15.5
TkA02G579420	`PF03109`	ABC1	345	381	1.9e-05	24.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LY50`	Arabidopsis thaliana	sp\|Q9LY50\|ACCR3_ARATH Putative serine/threonine-protein kinase-like protein CCR3	64.300%	Swiss-Prot	High
`Q9FIJ6`	Arabidopsis thaliana	sp\|Q9FIJ6\|ACCR4_ARATH Serine/threonine-protein kinase-like protein CCR4	38.500%	Swiss-Prot	Medium
`Q9LX29`	Arabidopsis thaliana	sp\|Q9LX29\|ACR4L_ARATH Serine/threonine-protein kinase-like protein ACR4	35.900%	Swiss-Prot	Medium
`Q75J39`	Oryza sativa subsp. japonica	sp\|Q75J39\|CKI4_ORYSJ Serine/threonine-protein kinase-like protein CR4	36.600%	Swiss-Prot	Medium

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